Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq104288 336 2e-86 seq109484 89.7 4e-12 >seq104288 Length=47184 Score = 336 bits (372), Expect = 2e-86 Identities = 946/1442 (66%), Gaps = 24/1442 (2%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| ||||| ||||| ||||| ||||| | |||||||| || || || Sbjct 477 TTGTCAACAGCAGATACATTGAGAATGCCATTAGCATCGATGTCAAATGTTACCTCGATC 536 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || ||||| ||||| | || |||||||||||| || | ||| | || || || Sbjct 537 TGCGGGACTCCTCTTGGGGCTGGTGGGATCCCTGTCAGGTCAAACTTGCCAAGGAGGTTG 596 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 ||||||||||| | | |||||| || || | ||||| || | | || ||| Sbjct 597 TTATCTTTAGTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCCGGCTGGTTA 656 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 || || ||||| | || | ||||| ||| ||| || || || ||||| | | || Sbjct 657 TCGGAGTAAGTGGAGAAGA-TCTGGGTTTGTTTGGTGGGGATAGTGGTGTTACGTTTGAT 715 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 | ||||| | ||||||||||| || | || | ||| || |||| ||||| | Sbjct 716 CAGCGCCGTCATTACTCCACCTGCTGTCTCAATGCCCAAAGACAGTGGAGCAACATCGAG 775 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 || | | | || | || ||| || | || | || ||||| || || | || Sbjct 776 CAGAAGGAGGTCCTGGACGTTCTCAGAGGTGTCCCCCATCAGGATAGCAGCCTGGACCGC 835 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 517668 ||| ||||| || ||||||||||| || |||| ||| || | | | ||||| || Sbjct 836 AGCTCCATAAGCTACAGCTTCATCTGGGTTAATGCTTTTGTTCAAGTCCCTTCCATTAAA 895 Query 517669 AAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| ||| |||| | | || ||||| | | ||||| || || | ||||| Sbjct 896 GAAATCCTGAAGCAGTTTTTGGATTTTGGGAATTCTTGTGGATCCGCCCACCAGGACAAT 955 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || | | || ||||| ||||| || | || ||| ||| ||||| || || || Sbjct 956 GTCGTTGATCTTGGATTTGTCCAGCTTGGCGTCTTGTAAGGATTTCTCAACAGGGTCTAG 1015 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 |||| || | ||||| |||||||| ||| || | ||| || ||| | Sbjct 1016 TGTGCCTCTGAAGAGATCTGAGTTGAGTTCTTCAAATCGGGCGCGAGT--GATTGAGGTG 1073 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || |||||||| || | | ||| |||| |||||| | | ||| || || ||| Sbjct 1074 TAAAAGTCAATTCCCTCATATAGAGAGTCAATTTCAATGCTTGCTTGGGTGCTGGATGAT 1133 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGA 517962 || | | || ||||||||||| || || | ||| || | | ||| | | ||| Sbjct 1134 AGGGTCCTCTTGGCACGTTCACAAGCCGTGCGTAGCCTCCTCACCGCTCTCTTGTTCTGG 1193 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 |||| ||| | || || |||||||| || || || ||| | | || | || Sbjct 1194 CTGATG----TCTTTCTTGTACTTTCTCTTAAACTCATCGACAAAGTGCTTCACCATGCG 1249 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||| ||||| ||||| || ||||| | || | ||| | || ||| | |||| |||| Sbjct 1250 ATTGTCAAAGTCTTCTCCACCCAAGTGTGTGTCTCCAGCTGTGGCTTTCACTTCAAAAAT 1309 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||||||| | || || | || || || || || |||| |||||| || || Sbjct 1310 GCCATCTTCAATCGTCAGAATGGACACGTCGAAAGTGCCGCCGCCCAGATCAAAGATGAG 1369 Query 518143 TACATTCATTTCTTTGTCTTGGTTT----TTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 ||||| || | | | ||| || || |||||||| |||| ||| || |||| Sbjct 1370 AACATT----TCGCTCCCCTCTTTTCCCCTTGTCTAGACCATATGCAATAGCTGCTGCAG 1425 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 |||||||||| || ||||||| ||||| ||||||| ||| ||| || ||||| |||| Sbjct 1426 TTGGTTCATTGATGATTCTCAGGACATTTAGACCAGAAATAACTCCAGCGTCTTTTGTGG 1485 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCT 518317 |||| | ||| || || || ||||| ||||| || || || || || | | ||| ||| Sbjct 1486 CTTGGCGTTGGGAGTCATTGAAATAAGCAGGGACTGTGATGACTGCGTTGGACACTCTCT 1545 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 |||| ||| || ||| ||| |||||| ||| |||| ||||||||| |||| | Sbjct 1546 GCCCCAA-ATAGGCCTCTGCGATTTCTTTCATCTTAACCAAAACCATTGATGAGATTTCT 1604 Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 ||||| || || ||| | ||| || || |||| | | || || || Sbjct 1605 TCTGGATAAAATGCCTTCGTCTCACCTTTGTACTCCACTTGTACTTTGGGCTTGCCGCCG 1664 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 || | || ||||| || ||||| ||||| || | || ||| | |||||| ||| Sbjct 1665 TCACTGATCACTTTGAAAGGCCAAAGCTTCATGTCAGCCTGCACAATAGGGTCATCAAAT 1724 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | ||| || || | || || || || || || || || | ||| || || || | || Sbjct 1725 TTTCTCCCGATGAGTCTCTTGGCGTCGAAGATGGTGTTAGCTGGGTTCATGGCCACCTGG 1784 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||||||||| || || || || || || || || || | ||||| || || Sbjct 1785 TTTTTGGCTGCGTCGCCGATTAGCCTCTCGGTGTCGGTGAAGGCGACATAACTGGGCGTG 1844 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 ||||| || || || ||||| |||||||| || ||||| || | || | || || ||| Sbjct 1845 GTGCGGTTGCCCTGGTCATTGGCAATAATCTCCACTTTGCCGTGCTGGAAGACGCCCACA 1904 Query 518678 CA 518679 || Sbjct 1905 CA 1906 >seq109484 Length=39712 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| || || || ||||||||||| ||||| | || ||| Sbjct 33717 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATAATACGCAGCACA 33776 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| || ||||| ||| |||||||| || || || | || || || || || || Sbjct 33777 TTAAGCCCGGCAATAGCTCCAGCATCTTTGGTCGCCTGACGCTGGGAGTCATTGAAGTAG 33836 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | ||| |||| Sbjct 33837 GCAGGGACAGTTACAACTGCAT 33858 Score = 87.8 bits (96), Expect = 1e-11 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || ||| || || ||||| || || ||| ||| ||| || |||| | |||||| Sbjct 32547 ATCATTGGTGATGGTAATCTTGTTTTCTTTCCCTGTGCTTTTGTCCACGGCTGACACATT 32606 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 ||||||||||||||| || | ||||| || || ||||| || ||||| |||| |||| Sbjct 32607 AAGAATACCATTGGCGTCAATGTCAAAGGTCACCTCAATCTGGGGGACACCTCGTGGAGC 32666 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||||||||| || | | ||| ||||||| | || || ||||| || Sbjct 32667 AGGTGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTGGT 32717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3773078982711064