Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq104288 331 1e-85 seq109484 95.1 2e-14 seq112962 82.4 1e-10 >seq104288 Length=47184 Score = 331 bits (366), Expect = 1e-85 Identities = 1041/1601 (65%), Gaps = 24/1601 (1%) Strand=Plus/Plus Query 6539 TTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCT 6598 ||||| || | ||||| | | | | ||||||| || | || || || || |||||| Sbjct 336 TTCTTAGCTGCAACCTTGTCCCTTTGCATTTCATCCTCTGCCTTGTATTTCTCTGCATCT 395 Query 6599 TGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATC 6658 || ||||| | || ||||| ||||| | ||||| || ||||| || ||||| || Sbjct 396 TGCACCATTTGCTCGATGTCCTCTTTGCTGAGCCTCCCTTTGTCATTGGTGATCGTGATT 455 Query 6659 TTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCA 6718 || | || || | | ||| || ||||| |||||| | ||| ||||| ||||| Sbjct 456 TTGTTTTCCTTCCCTGTGCTCTTGTCAACAGCAGATACATTGAGAATGCCATTAGCATCG 515 Query 6719 ACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAA 6778 | || || |||| | || || || || || || || | ||| || || || | Sbjct 516 ATGTCAAATGTTACCTCGATCTGCGGGACTCCTCTTGGGGCTGGTGGGATCCCTGTCAGG 575 Query 6779 TCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTA 6838 ||||| | ||||| | ||||||| | | | | | |||||||||| | || | Sbjct 576 TCAAACTTGCCAAGGAGGTTGTTATCTTTAGTCATGGCCCTTTCACCTTCAAACACCTGG 635 Query 6839 ATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGA 6898 || ||| | || || ||||| || |||||||| || || || | || Sbjct 636 ATGAGCACACCCGGCTGGTTATCGGAGTAAGTGGAGAAGATCTGGGTTTGTTTGGTGGGG 695 Query 6899 ATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGA 6958 || || || || | || | || ||||| | ||||| || || | || | | Sbjct 696 ATAGTGGTGTTACGTTTGATCAGCGCCGTCATTACTCCACCTGCTGTCTCAATGCCCAAA 755 Query 6959 GACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTT 7018 ||||| || | || || | || | ||||| || || || || ||| | Sbjct 756 GACAGTGGAGCAACATCGAGCAGAAGGAGGTCCTGGACGTTCTCAGAGGTGTCCCCCATC 815 Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 | ||| || || ||||||| || || || || || || ||||| |||||||| |||| Sbjct 816 AGGATAGCAGCCTGGACCGCAGCTCCATAAGCTACAGCTTCATCTGGGTTAATGCTTTTG 875 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 |||| || | || ||||| ||||| | || || ||| ||||| || |||| ||| Sbjct 876 TTCAAGTCCCTTCCATTAAAGAAATCCTGAAGCAGTTTTTGGATTTTGGGAATTCTTGTG 935 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 ||||| || |||| || || || || | || ||||| || | ||| | |||| | | Sbjct 936 GATCCGCCCACCAGGACAATGTCGTTGATCTTGGATTTGTCCAGCTTGGCGTCTTGTAAG 995 Query 7199 GTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAA 7255 | ||| || ||||| || | | | | | ||| | || ||||| ||||| Sbjct 996 GATTTCTCAACAGGGTCTAGTGTGCCTCT---GAAGAGATCTGAGTTGAGTTCTTCAAAT 1052 Query 7256 CGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || || || || || || || || |||| || || |||| || |||||||||||| Sbjct 1053 CGGGCGCGAGTGATTGAGGTGTAAAAGTCAATTCCCTCATATAGAGAGTCAATTTCAATG 1112 Query 7316 GTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA 7375 ||| ||| | | || |||| || | ||| || || ||||| ||||| |||| | Sbjct 1113 CTTGCTTGGGTGCTGGATGATAGGGTCCTCTTGGCACGTTCACAAGCCGTGCGTAGCCTC 1172 Query 7376 CGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG 7435 | | || | | ||| | || |||||||| | || | |||||||| || Sbjct 1173 CTCACCGCTCTCTTGTTCTGGCTGATGTCTTTCTTGTACTTTCTCTTAAACTCATCGACA 1232 Query 7436 AAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||||| | | | || || ||||| |||||||||||||| || || || || Sbjct 1233 AAGTGCTTCACCATGCGATTGTCAAAGTCTTCTCCACCCAAGTGTGTGTCTCCAGCTGTG 1292 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCA 7555 ||||| |||||||| || || ||||||| | | | || || || || || || || Sbjct 1293 GCTTTCACTTCAAAAATGCCATCTTCAATCGTCAGAATGGACACGTCGAAAGTGCCGCCG 1352 Query 7556 CCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTC---TTATCGAGACCGTA 7611 ||||| ||||| ||||| || || ||| || || | ||| || || ||||| || Sbjct 1353 CCCAGATCAAAGATGAGAACATT----TCGCTCCCCTCTTTTCCCCTTGTCTAGACCATA 1408 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAG 7670 || ||||| || || ||||||||||| || || | | |||| || || |||| |||| Sbjct 1409 TGCAATAGCTGCTGCAGTTGGTTCATTGATGATTCTCAGGACA-TTTAGACCAGAAATAA 1467 Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 | | || ||||| || ||||| ||||| || || || || || || ||||| || | || Sbjct 1468 CTCCAGCGTCTTTTGTGGCTTGGCGTTGGGAGTCATTGAAATAAGCAGGGACTGTGATGA 1527 Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAA 7790 | |||| | ||| ||| || | ||| | || ||||| |||||||| || | || Sbjct 1528 CTGCGTTGGACACTCTCTGCCCCAAATAGGCCTCTGCGATTTCTTTCATCTTAACCAAAA 1587 Query 7791 CCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAA 7850 |||| ||||| || ||||| | ||| ||||| ||||| || | || |||| | Sbjct 1588 CCATTGATGAGATTTCTTCTGGATAAAATGCCTTCGTCTCACCTTTGTACTCCACTTGTA 1647 Query 7851 TCATGGGTTTATCCGCAG-CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 |||| || |||| | ||| ||| || || | | |||| ||||| || | Sbjct 1648 CTTTGGGCTT-GCCGCCGTCAC---TGATCACTTTGAAAGGCCAAAGCTTCATGTCAGCC 1703 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 || || |||| ||| ||||| ||||| || | ||| || || || | ||||| Sbjct 1704 TGCACAATAGGGTCATCAAATTTTCTCCCGATGAGTCTCTTGGCGTCGAAGATGGTGTTA 1763 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 ||||||||||| ||||| || || ||||| ||||| || | || | | || Sbjct 1764 GCTGGGTTCATGGCCACCTGGTTTTTGGCTGCGTCGCCGATTAGCC--TC-TCGGTGTCG 1820 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || ||||| || || || || || || || ||||| || |||||||| || || Sbjct 1821 GTGAAGGCGACATAACTGGGCGTGGTGCGGTTGCCCTGGTCATTGGCAATAATCTCCACT 1880 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 | ||| || ||||||| || || || || || || || Sbjct 1881 TTGCCGTGCTGGAAGACGCCCACACAGGAGTAGGTGGTCCC 1921 >seq109484 Length=39712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 || || || || || || || ||||||||||| |||||||| || ||| || || || || Sbjct 33729 CCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATAATACGCAGCACA-TTAAGCCCGGC 33787 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||||| | | |||||||| ||||| || || || || || || |||||||| ||||| || Sbjct 33788 AATAGCTCCAGCATCTTTGGTCGCCTGACGCTGGGAGTCATTGAAGTAGGCAGGGACAGT 33847 Query 7726 TACGACCGC 7734 ||| || || Sbjct 33848 TACAACTGC 33856 >seq112962 Length=15023 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| ||||||||| ||||||||||||| || ||||| || ||||| ||||| || | Sbjct 961 CAAAGACTGTGTTTGTGGGGTTCATGGCCACCTGATTCTTGGCTGCGTCGCCGATCAGCC 1020 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 || | | || || || || || || | |||| || || | || || |||||||| Sbjct 1021 --TC-TCTGTGTCTGTGAAGGCCACATA-GCTGGGTGTGGTCCTGTTACCCTGGTCGTTG 1076 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 ||||| || || || | | | || |||| || ||||| || || || || || | | Sbjct 1077 GCAATGATCTCCACTTTGCCATGCTGGAAGACCCCTACGCAGGAGTAGGTGGTCCCCAGA 1136 Query 8135 TCAATACCGATTGCT 8149 ||||| |||| |||| Sbjct 1137 TCAATGCCGACTGCT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633893941716960