Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq77734 246 4e-60 seq142225 96.9 4e-15 >seq77734 Length=62899 Score = 246 bits (272), Expect = 4e-60 Identities = 915/1405 (65%), Gaps = 48/1405 (3%) Strand=Plus/Plus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAA--GACCCCAAATGTCC 111761 ||||| || || | || || || |||||||| || |||||| ||||||| | ||| Sbjct 10750 GTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGG--CACCAACAGACCCCAGCTCTCC 10807 Query 111762 AGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACT 111821 || || ||||| | || | ||||| || || | |||||||| | ||| |||| Sbjct 10808 AGCTGCTTCCTACTGGCCATGAAGGATGACAGCATTGAAGGCATTTATGACACACTCAAA 10867 Query 111822 GAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGAT-GCACATCCATGATGTCAG 111880 ||||||| | |||||||| | || || || || || | ||| | || | || Sbjct 10868 CAATGTGCACTCATCTCAAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGCATT-AG 10926 Query 111881 AGCCAACAAGTCTCGT-ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGC 111939 | | |||| || | ||| ||| ||||||||| | ||| |||| || | ||||||| Sbjct 10927 ATC-AACAGGTAGCTACATTGCAGGAACAAATGGTAATTCAAATGGCCTTGTGCCAATGC 10985 Query 111940 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGAT 111996 | | || | |||| |||||| || || || |||||| ||| | || ||| Sbjct 10986 TGAGGGTGTATAACAACACAGCACGTTACGTGGACCAAGGTGGCAATAAACGACCGGGTG 11045 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 | | || | || || |||||||||||| || | | || ||||||||||| Sbjct 11046 CCTTTGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGA 11105 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 ||| ||| | |||||| | || || || ||||||| || || ||||| || | Sbjct 11106 AAAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTG 11165 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC-AGACAAG 112175 || | ||||||||||| || || | | | |||||| | | || || || | Sbjct 11166 ATTTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAGTGAGT 11225 Query 112176 GCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA 112234 || || || || || || | ||| ||||||||||| || ||||| ||||| Sbjct 11226 GC-CCTGGGCTGGATGAGTGTTGGGGG-GAGGAGTTTGAGAAGCTGTACACGCGCTACGA 11283 Query 112235 GGAAGAAAGTCGGGC-GACTGCGACGGT--GCCA--GCTGCCGATGTGTGGAAAGCTATT 112289 | | || |||| || || |||| | || ||| | |||||| | || || Sbjct 11284 GCAGGA-----GGGCAGAGTGAAACGGGTAGTCAAGGCTCAGCAGGTGTGGTATGCCATC 11338 Query 112290 CTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAA 112349 | ||||||| || ||||| || || || || ||| | |||||||| ||||||||| Sbjct 11339 ATAGAGTCTCAGACAGAGACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACAGG 11398 Query 112350 AAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTG 112409 |||||||| || |||||||||| ||||| | ||| | || ||||| || || Sbjct 11399 AAGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTGCACAGAGATTGTG 11458 Query 112410 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 112469 || | |||| | |||||||| |||||||||||| | || || || || ||| || | Sbjct 11459 GAGTATACAAGCCAAGATGAGGTAGCTGTGTGTAACTTGGCTTCTATTGCACTCAACATG 11518 Query 112470 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAA---A 112526 ||||| |||||| | ||| ||||| | |||| || | ||| || || | Sbjct 11519 TATGTAACTCCAGA---ACGGACCTTTGACTTCAAAAAGCTTGCCTCAGTCACTAAAGTA 11575 Query 112527 ACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGC 112585 | ||| || |||||| |||| | ||||| | ||| | ||||| ||| ||| || Sbjct 11576 ATTGT---AAGAAACCTCAACAAGATCATTGACATAAACTACTACCCAGTTCCAGA-GGC 11631 Query 112586 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGT 112645 || || || | | ||| | || ||||| | ||||| || |||||||| |||| Sbjct 11632 GGAGAACTCAAACAGACGCCACAGGCCTATTGGAATTGGTGTGCAGGGTCTCGCAGATGC 11691 Query 112646 ATTCATTCTTTGTCGCCACGCATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGT 112703 |||||||| || | |||||| | ||| ||||| || | ||| | Sbjct 11692 CTTCATTCTCATGCGTTATCCATTTGAAAGTCC--TGAAGCCCAGCTGCTGAATATCCAG 11749 Query 112704 ATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGAT 112763 || |||||||| || || | || || | ||| | || | ||||| ||||| ||| Sbjct 11750 ATCTTTGAGACCATCTACTATGCTGCCTTGGAGTCAAGCTGTGAGTTAGCAGAAAAAGAT 11809 Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATAT 112822 || || ||||| |||| |||||||||| | ||||| | || || | || || Sbjct 11810 GGGCCTTATGAGACCTACCCAGGTTCTCCAG-TGAGTAAGGGCATTCTGCAGTACGACAT 11868 Query 112823 GTGG--GAAGGTGAGACC-AAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAA 112879 |||| |||||| ||| | || | || |||||| | || ||||| || Sbjct 11869 GTGGGAGAAGGT---ACCGACTCTGCTCTGGGACTGGAAACTGCTTAAGGAGAAGATAGC 11925 Query 112880 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 | | ||| | | ||||| | ||| |||| || ||||| || |||||||| ||||| Sbjct 11926 TAAACATGGTATAAGGAACAGCTTGTTGTTGGCCCCCATGCCTACTGCCTCCACAGCACA 11985 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 112999 ||| |||||||||||||| | | | ||| ||||||| | |||||||| | ||| Sbjct 11986 AATATTGGGTAATAATGAGTCCATCGAAGCCTACACTAGCAACATCTACACACGCAGAGT 12045 Query 113000 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 113059 |||| | ||||||||| ||| || ||| ||||| | | ||||| | || || Sbjct 12046 CCTCTCCGGAGAGTTTCAGATCGTAAACCCACATCTGCTCAAGGACCTGACTGAACGGGG 12105 Query 113060 TCTCTGGTCCAAGGATATGAAGGAT 113084 || ||| | |||| |||||| || Sbjct 12106 GCTGTGGAACGAGGAAATGAAGAAT 12130 >seq142225 Length=5922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| ||||| |||||||||||||| |||||| ||| Sbjct 3042 GAGCGCGTCGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCC 3101 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| ||||| ||||| || ||||| || || ||||||||||||||| ||| Sbjct 3102 ATTTTCTGGCTGAAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATC 3161 Query 102300 TCTCGTGACGAGGGAC 102315 | ||||||| || Sbjct 3162 AGCAGAGACGAGGTAC 3177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619531610911680