Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq77734 241 2e-58 seq89243 122 1e-22 seq62746 95.1 1e-14 >seq77734 Length=62899 Score = 241 bits (266), Expect = 2e-58 Identities = 884/1360 (65%), Gaps = 32/1360 (2%) Strand=Plus/Minus Query 105875 AGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA 105934 || || |||| ||||| ||| || ||| ||||||||| | |||| ||| | Sbjct 12093 AGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTG 12034 Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||||| ||| | | | |||||||||||||| |||||||| |||||| Sbjct 12033 TAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAG 11974 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || |||| ||| | ||||| | | ||| | || || ||| Sbjct 11973 GCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCC 11914 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTC--CCACATATCAAATTGAA 106112 || || | | |||||| || || | | | |||||| |||||| || | || | Sbjct 11913 TTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGT--ACCTTCTCCCACATGTCGTACTGCA 11856 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | || | | |||||||| | |||||||| | || | ||| || | Sbjct 11855 GAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTA 11796 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 | |||||||| | ||||| || || | || ||||| |||||||| | ||||| | Sbjct 11795 ACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCA 11736 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 || ||||||| ||||||| || || | ||| || |||| |||||||| | Sbjct 11735 GCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCT 11676 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGA 106351 | ||||| | |||||||| ||||| || | || || || ||| ||| ||| || Sbjct 11675 GCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCC-TCTGGAACTGGG 11617 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCA 106408 || | ||| ||||||||| ||| || ||| | ||||| |||| |||| | Sbjct 11616 TAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGACTGAG 11560 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 ||| |||| | ||||| || || ||| | | |||||| | || || || Sbjct 11559 GCAAGCTTTTTGAAGTCAAAGGTCCGT---TCTGGAGTTACATACATGTTGAGTGCAATA 11503 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || ||||| || || ||||| |||||| | ||| ||||| | ||| ||||| ||| Sbjct 11502 GAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCAC 11443 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 ||||| | || || || |||||||||| ||||||||||| |||| || ||||| Sbjct 11442 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 11383 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648 ||||| | |||||| || || || ||||| ||||| |||| | || || | |||||| Sbjct 11382 TTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACC 11323 Query 106649 T-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 | | | | || | || | || | | |||||| |||||| ||||| || Sbjct 11322 TGCTGAGCCTTG-ACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTT 11264 Query 106708 TTCAAACTCCT-CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGA 106765 |||||||||| | |||| | | || || || || || | || || || | | | Sbjct 11263 CTCAAACTCCTCCCCCCAACAC-TCATCCAGCCCAGG-GCACTCACTGGGGCACATCAAA 11206 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 ||||| | | || |||| ||||||||| | || || ||||| |||| | Sbjct 11205 GACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAG 11146 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 ||||| |||| || ||| || | ||| ||| |||||||||||| || Sbjct 11145 AAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCA 11086 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 106942 | | || |||||||||||| || || | || | | ||| ||| | ||| Sbjct 11085 AACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCA 11026 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 |||| | || || || |||||| |||| | || | |||||||| | || |||| | Sbjct 11025 CCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTT 10966 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCACATCATGGATGTGC-A 107060 || | ||||||||| || ||| || | | | | ||| | || | ||| | Sbjct 10965 GAATTACCATTTGTTCCTGCAAT-GTAGCTACCTGTTGATCT-AATGCAGCTAACTGCTA 10908 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 ||||| || || || | |||||||| | ||||| | | || || |||| || | Sbjct 10907 CACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGC 10848 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGG 107178 | | || ||| ||||| |||| | |||||||| ||||| | ||| |||| |||| Sbjct 10847 CTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGG 10788 Query 107179 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || || || ||||| || || || | || ||| ||||| Sbjct 10787 TG--CCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC 10750 >seq89243 Length=32234 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||| |||| ||| || || |||| |||| || || || || Sbjct 17021 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCC 17080 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 ||||||| ||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 17081 TAAATTCTGCTGGTTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCC 17140 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||| |||||||||| | ||| || | ||||| Sbjct 17141 CGTCTCGGTCTGTGACTCAATAATGGCATACCACA 17175 >seq62746 Length=64918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/123 (80%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAG-AAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||| | ||||||||||| || ||| | ||||| ||||| ||||||| ||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGGCCAGGCATTAGACCCCTCTTT 62087 Query 117352 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 |||| |||||||||||| ||| || || || |||||||| || ||||| ||| ||||| Sbjct 62086 TTCAGCCAATAAATAGCAGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 62028 Query 117411 CGC 117413 ||| Sbjct 62027 CGC 62025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588830012950560