Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq77734 376 3e-99 seq62746 82.4 9e-11 >seq77734 Length=62899 Score = 376 bits (416), Expect = 3e-99 Identities = 1007/1545 (65%), Gaps = 35/1545 (2%) Strand=Plus/Minus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| || || || || ||||| ||||| || || ||||| || | || || || || Sbjct 12081 AGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTA 12022 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || || | ||| || || |||||||| || || ||||| || || || || ||||||||| Sbjct 12021 GTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATG 11962 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489 | || | || ||||| || |||| |||| ||| ||||| ||||| Sbjct 11961 GGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTC 11902 Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTT 47549 || ||||| || | || || | ||| | || || || ||||| || ||||| Sbjct 11901 CAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTACTC 11842 Query 47550 ATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCT 47609 | |||||||| || || | |||||| || | | || || | ||||| |||| Sbjct 11841 ACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTTGAC 11782 Query 47610 TCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGAT 47669 ||||| ||| ||| || || || ||||| || | || || || | ||||| | Sbjct 11781 TCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGA 11722 Query 47670 GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 |||||| ||||| || | |||||| | || || |||||||| ||| Sbjct 11721 CTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCA 11662 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 || || || || | | || || ||| || ||||| | ||| || | |||||| || Sbjct 11661 ATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATGTCA 11602 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT------------ 47837 || || || || || |||||| || ||| | Sbjct 11601 ATGATCTTGTTGAG------------GTTTCTTACAATTACT-TTAGTGACTGAGGCAAG 11555 Query 47838 -TTATTAAAATCAAACTT--GTTATTTA-TAACAAACCTATTAAGTGCTATAGATGCTAG 47893 || || || ||||| | ||| | | | ||| || | || ||||| ||||| || | Sbjct 11554 CTTTTTGAAGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAA 11495 Query 47894 ATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952 ||||| ||||||||||||| |||| || ||||| | | || || | || | |||| Sbjct 11494 GTTACACACAGCTACCTCATCTTGGCTT-GTATACTCCACAATCTCTGTGCACAAGTTAC 11436 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 |||||||| || |||||||| || || ||| | ||||||| || || ||||| | Sbjct 11435 TGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACA 11376 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072 ||| |||| ||||| || ||| ||||||| || ||||| | | ||| || | || Sbjct 11375 ACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAG 11316 Query 48073 CCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 |||| | || | | || | || || ||||| || || | ||||||||| | Sbjct 11315 CCTTGACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACT 11256 Query 48133 CATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 | ||||| | ||| | ||| | |||||| || ||| | || |||||||| ||||| ||| Sbjct 11255 CCTCCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCC 11197 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATC 48250 | | |||| || || |||| || | ||| || ||||| || || ||| || | || Sbjct 11196 TGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTC 11138 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 | | || | || || || ||| | || | || | ||||| ||||| | | || Sbjct 11137 TCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTC 11078 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | |||||||| || | || || || | |||| ||||||||||| || ||||| || Sbjct 11077 AAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTC 11018 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | || | || || |||||||| || || | |||||| |||| |||||||| |||| Sbjct 11017 CACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACC 10958 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||| ||||| | ||| || || || | | ||| || |||| || | ||| || || Sbjct 10957 ATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCC 10898 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 ||||| ||| || || || ||||| |||| || || |||||||| ||||| || || Sbjct 10897 TCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCT 10838 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 ||||| |||| | ||| || || || || | || || || |||| || Sbjct 10837 GTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGGTGCCTGCGTT 10778 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || | || ||||| |||||| | ||||| ||||| || | || || || || ||||| Sbjct 10777 GAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAAT 10718 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 | | || ||||| || || || || | || ||| | ||| | ||||| ||| || Sbjct 10717 GGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGG 10658 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 | ||| | | ||| ||| ||||||| || || || || | |||||||| || Sbjct 10657 ACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCC 10598 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||| | || || ||||| || |||||| || || | ||||| Sbjct 10597 AAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATT 10553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| || ||||| || || | ||| || | || |||| ||||||||||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || ||||| ||||| | ||||| | || || ||||| | || ||| | Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | || | ||| ||||| || |||||||| | ||||| | || ||||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGGGA 12252 >seq62746 Length=64918 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || || | ||||||||||| || || | |||||||||||| || |||||||| || Sbjct 62798 CATAACGCCAAACTTTTGATATTCTGCTACCCGTTTTTCAAAGAAGTTGGTTTTTCCTTC 62739 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 | ||| || | ||||| || ||||||||||||| Sbjct 62738 AAGTGAAATTGACTCCATGAAGTCAAATGGATTTT 62704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561012378680160