Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq104288 161 8e-34 seq109484 123 2e-22 >seq104288 Length=47184 Score = 161 bits (178), Expect = 8e-34 Identities = 453/693 (65%), Gaps = 2/693 (0%) Strand=Plus/Minus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 ||| | || ||||| ||| | ||||| | | || ||||| | || ||| | | ||| Sbjct 1168 CTACGCACGGCTTGTGAACGTGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAGCATT 1109 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 ||| | || || ||| |||||||||||| | | | || | || | | ||| |||| Sbjct 1108 GAAATTGACTCTCTATATGAGGGAATTGACTTTTACACCTCAATCACTCGCGCCCGATTT 1049 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 ||||| | || |||||||| ||| ||| | || || || || || ||| | Sbjct 1048 GAAGAACTCAACTCAGATCTCTTCAGAGGCACACTAGACCCTGTTGAGAAATCCTTACAA 989 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 || | ||| | || |||||||| | | || ||||| || || || ||||| |||||| Sbjct 988 GACGCCAAGCTGGACAAATCCAAGATCAACGACATTGTCCTGGTGGGCGGATCCACAAGA 929 Query 552147 ATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 ||||| ||||| | || || || || || ||| ||||| | | || || |||| Sbjct 928 ATTCCCAAAATCCAAAAACTGCTTCAGGATTTCTTT-AATGGAAGGGACTTGAACAAAAG 870 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 |||| |||||||| ||||| || ||||| || || | || || ||||| || || Sbjct 869 CATTAACCCAGATGAAGCTGTAGCTTATGGAGCTGCGGTCCAGGCTGCTATCCTGATGGG 810 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 | || ||| || | || | | | || | |||||| |||| || ||| | || Sbjct 809 GGACACCTCTGAGAACGTCCAGGACCTCCTTCTGCTCGATGTTGCTCCACTGTCTTTGGG 750 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | || |||| || || | ||||| || ||| | | || || ||||| || Sbjct 749 CATTGAGACAGCAGGTGGAGTAATGACGGCGCTGATCAAACGTAACACCACTATCCCCAC 690 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| || | | | || || || || || ||||| || | | ||| || || | Sbjct 689 CAAACAAACCCAGATCTTCTCCACTTACTCCGATAACCAGCCGGGTGTGCTCATCCAGGT 630 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 |||||||| ||||| | ||||||||||| || | ||||| | ||| | | Sbjct 629 GTTTGAAGGTGAAAGGGCCATGACTAAAGATAACAACCTCCTTGGCAAGTTTGACCTGAC 570 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| || || || || || | ||||| ||||| || || || || || || |||||||| Sbjct 569 AGGGATCCCACCAGCCCCAAGAGGAGTCCCGCAGATCGAGGTAACATTTGACATCGATGC 510 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| ||| | ||||| ||||| ||| || Sbjct 509 TAATGGCATTCTCAATGTATCTGCTGTTGACAA 477 Score = 154 bits (170), Expect = 1e-31 Identities = 345/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| || || | || | || ||||| || |||||||||||||| || || ||| | Sbjct 1906 TGTGTGGGCGTCTTCCAGCACGGCAAAGTGGAGATTATTGCCAATGACCAGGGCAACCGC 1847 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || |||||| | ||||| || || || || | || || ||||| ||| Sbjct 1846 ACCACGCCCAGTTATGTCGCCTTCACCGACACCGAGAGGCTAATCGGCGACGCAGCCAAA 1787 Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | || | ||| || || || | || || || || || || || | | || || Sbjct 1786 AACCAGGTGGCCA-TG--AACCCAGCTAACACCATCTTCGACGCCAAGAGACTCATCGGG 1730 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 |||| ||| |||| | | ||| ||||| || ||||||| |||||||||| || | | Sbjct 1729 AGAAAATTTGATGACCCTATTGTGCAGGCTGACATGAAGCTTTGGCCTTTCAAAGTGATC 1670 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 | || || || || | | ||| | |||| || ||||| Sbjct 1669 AGTGACGGCGGCAAGCCCAAAGTACAAGTGGAGTACAAAGGTGAGACGAAGGCATTTTAT 1610 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| |||| ||||| |||||||| | || |||||| ||| || || | | | Sbjct 1609 CCAGAAGAAATCTCATCAATGGTTTTGGTTAAGATGAAAGAAATCGCAGAGGCCTATTTG 1550 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || ||| | | ||||| || || || || || ||||| |||||||| ||||| Sbjct 1549 GGGCAGAGAGTGTCCAACGCAGTCATCACAGTCCCTGCTTATTTCAATGACTCCCAACGC 1490 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || ||||| |||||| |||| |||| || ||||| || | || ||||||||| Sbjct 1489 CAAGCCACAAAAGACGCTGGAGTTATTTCTGGTCTAAATGTCCTGAGAATCATCAATGAA 1430 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || |||||||||| || || || Sbjct 1429 CCAACTGCAGCAGCTATTGCATATGGTCTAGACAA 1395 >seq109484 Length=39712 Score = 123 bits (136), Expect = 2e-22 Identities = 109/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||||| || || || || |||||||| || ||||| || || ||||||| Sbjct 33858 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGTCAGGCGACCAAAGATG 33799 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||| || |||||||| || ||||||||||||||||| || || || || Sbjct 33798 CTGGAGCTATTGCCGGGCTTAATGTGCTGCGTATTATCAATGAACCAACAGCAGCAGCCA 33739 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 33738 TTGCCTATGG-CTTG 33725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021043689521560