Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq94641 212 1e-49 seq77734 208 1e-48 seq37876 170 4e-37 seq106008 167 4e-36 seq58794 147 4e-30 seq142225 102 2e-16 seq89243 96.9 6e-15 seq80509 93.3 8e-14 >seq94641 Length=15556 Score = 212 bits (234), Expect = 1e-49 Identities = 194/245 (79%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || | |||| |||||||| ||||||||| || ||||||||||||| Sbjct 12329 GCTGACAGCCGCTGCTTACGTGCGTCAGGACCTTCTGTTTGAGCTGCGCCACCTGGTCCC 12270 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| || ||||| || |||||||| || ||||||||| || ||||| || ||||||| Sbjct 12269 GCAGCACCGACGCCGTGTTGGACAGCCCCGCGTTGTCACTTTTCAGCACTTTTACTTTCT 12210 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||| ||| || ||||| ||||| |||||||| |||||||| || || |||| |||| Sbjct 12209 CCTCCAACCGGGCAATGCGCTCCAGCTTGCGCCGCCGGCATTTAGTAGCAGCCAGTCGGT 12150 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||| || ||||| | || || ||||| || || ||| ||||| ||| ||||| ||| Sbjct 12149 TCCTCAGCCTCTTCCTCTCGGCTTTGATCCGCTCTTGGGTCTCCAGGTCTATCGGGGACA 12090 Query 241629 TGGGT 241633 ||||| Sbjct 12089 TGGGT 12085 >seq77734 Length=62899 Score = 208 bits (230), Expect = 1e-48 Identities = 994/1560 (64%), Gaps = 46/1560 (3%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTA 212916 ||| ||||||||||| | ||||| | || |||| ||||| ||| || ||||| || | Sbjct 12124 CATTTCCTCGTTCCACA-GCCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGA 12066 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 |||| || || || ||||| || || | ||| | ||| |||||||| |||||| Sbjct 12065 TCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGG 12006 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 ||| || || |||| || ||||| ||| ||| || |||||||| |||| || | | Sbjct 12005 ACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGC 11946 Query 213037 TGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAG 213096 ||||||| | || || | | || | |||| | ||||||||| ||| Sbjct 11945 TGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTCCAGTCCCA--GAGCAG 11888 Query 213097 ACAGGTCCTCGT-CCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGG 213155 | ||| || ||||| | ||||||||| |||||| ||||| || ||||| || Sbjct 11887 A---GTC--GGTACCTTC---TCCCACATGTCGTACTGCAGAATGCCCTTACTCACTGGA 11836 Query 213156 CTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGG 213215 || |||| | || || |||| | | || | ||| ||| | || || | Sbjct 11835 GAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTTGACTCCAAG 11776 Query 213216 GCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGAC-GT 213274 ||||| ||||||||||| ||||| |||| | || ||| || ||| || |||| | Sbjct 11775 GCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTC--AGGACTTT 11718 Query 213275 GAAGGGCATCA-TCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGG 213333 || | || | |||| | ||| |||| || || ||||| || || || || || | Sbjct 11717 CAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCAATAG 11658 Query 213334 GTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGA 213393 | ||||| | ||| || || ||| | ||||| |||| ||| |||| Sbjct 11657 GCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATGTCAATGA 11598 Query 213394 TCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACA 213453 ||||||||||||| | ||||| ||||| ||| || | ||||| Sbjct 11597 TCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAG------CTTTTTGAAGT 11544 Query 213454 CGTAGCCCCCGTCCTG----CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACG 213509 | || |||| ||| ||| || || || || |||| ||| || || Sbjct 11543 CAAAG-GTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACA 11485 Query 213510 GCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATG 213569 || ||||| | | ||| ||||||| ||||| ||||||| ||| |||||| |||| Sbjct 11484 GCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATG 11425 Query 213570 GTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGG 213629 ||||||| ||||| ||||| ||| ||| | ||| ||||| | |||||| || Sbjct 11424 GTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGA 11365 Query 213630 GACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCA 213687 | || |||||| ||| ||| | | | |||| ||| | | | |||||||| | Sbjct 11364 GTTCCTGTCTCTGTCTGAGACTCTATGA--TGGCATACCACACCTGCTGAGCCTTGACTA 11307 Query 213688 CCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGC 213747 |||| | | ||| | | |||||| | ||| |||| | || || | | Sbjct 11306 CCCGTTTCA---CTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCC 11250 Query 213748 CCCAGACCCT-GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCA 213806 |||| || || ||||| || || || ||| ||||| | ||||||| || Sbjct 11249 CCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTG 11191 Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 | | || |||| |||||||| || |||| ||| || || ||| ||||| | | | Sbjct 11190 TTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCC 11131 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 ||| ||| || |||| |||||| | || || |||||||| | ||| |||| Sbjct 11130 CTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGC 11071 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGC 213983 || ||||||| ||| ||||||||||| ||||| | | ||||| || |||||||| Sbjct 11070 CATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAA 11011 Query 213984 CTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTT 214043 | || |||| | | | ||| | || || || || || || | || || ||| Sbjct 11010 CGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTT 10951 Query 214044 CCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCG 214103 || || || || || | | || | | ||| | | | || || || || || Sbjct 10950 CCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCA 10891 Query 214104 TACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCT 214163 | || ||||| | || || | | | || || ||||| | ||||||||||| Sbjct 10890 GATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCC 10831 Query 214164 GTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGC 214223 | | | ||| | ||||||||| ||||||||||| ||| | ||| | |||||| || Sbjct 10830 TTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGGTGCCTGCGTTGAACAGA 10771 Query 214224 GTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAG 214283 ||||| |||||| | | |||| | ||| || || |||||||||| | | | | | Sbjct 10770 GTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCG 10711 Query 214284 GGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCT-- 214341 || || |||||||| | ||| ||||| ||||| || || || | || Sbjct 10710 TCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCA 10651 Query 214342 -CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAG 214400 | | ||| || | || ||||||||||||||||| || || || || |||||| Sbjct 10650 GCCACTTTTCCATT---GATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAG 10594 >seq37876 Length=411 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 241405 CATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGT 241464 || |||| |||||||| ||| ||||| || |||||||||||||||| || |||||||| Sbjct 85 CACGTGCGTCAGGACCTTCTGCTTGAGCTGCTCCACCTGGTCCCGCAGCACCGACGCGGT 144 Query 241465 ATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGAT 241524 | ||| | | ||| | | ||| || ||||||||| ||||||||||||| ||| Sbjct 145 GGACGCCAGGTCCGTGTTCTGGGTCTTCAGACTCTTCACTTTGTCCTCCAGCCGCGAGAT 204 Query 241525 GCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACG 241584 ||| ||||||||||| |||||||| |||| || || | |||||| || || | ||| || Sbjct 205 GCGCTCCAGTTTGCGGCGGCGGCACTTGGACGCGGCGATGCGGTTGCGCAGCCGCTTCCG 264 Query 241585 TTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || ||||||||||| ||||| ||||||||||| || || Sbjct 265 CTCGGCCTTGATGCGCTCCTGAGAGTCCATGTCGATGGGGGA 306 >seq106008 Length=20642 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 241391 TGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGC 241450 || ||||| || || ||| || ||| | |||||||||||||| ||||| |||||| Sbjct 2978 TGGCAGCCGCTGCTCACGTGTGTCATGACTTTTTGTTTGAGTTGGGCGACCTGCTCCCGC 2919 Query 241451 AGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCC 241510 || || ||||| || || |||||||| |||||||| | || || || || ||||| || Sbjct 2918 AGCACAGACGCAGTGTTTGACAGTCCAGCGTTGTCCGTTTTCAGGACTTTAACTTTTTCT 2859 Query 241511 TCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTC 241570 || || || || || ||||||||||| || | |||||||||| |||||||| |||||| Sbjct 2858 TCAAGACGAGCAATACGTTCCAGTTTTCGTCTCCGGCATTTGGAGGCTGCCAGTCGGTTC 2799 Query 241571 CGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || | ||| || || || ||||| || ||||| | ||||| || || |||||| Sbjct 2798 CTCAGACGCTTGCGCTCGGCTTTGATCCGCTCCTGATTCTCCAAATCAATGGGAGAC 2742 >seq58794 Length=6477 Score = 147 bits (162), Expect = 4e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 241402 GCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGC 241461 || || ||| | || ||||| ||||||||| || |||||||| || ||||| ||| || Sbjct 6155 GCTCACGTGACTCATGACCTTCTGTTTGAGCTGTGCCACCTGCTCGCGCAGGACGCTGGC 6214 Query 241462 GGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGC 241521 ||| | ||| | | ||| | | || || ||| ||||| ||||||||||| | Sbjct 6215 GGTGGACGCCAGCTCAGTGTTCTGTGTTTTTAGTGTCTTTACTTTGTCCTCCAGCCGTGA 6274 Query 241522 GATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTT 241581 |||||| |||||||| || |||||| |||| ||| || | |||||| || || |||| Sbjct 6275 GATGCGCTCCAGTTTACGTTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTT 6334 Query 241582 ACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || |||||||||||||| ||||||| |||||||| || || ||| Sbjct 6335 GCGCTCCGCCTTGATGCGCTCCTGGTTGTCCATGTCAATGGGCGAC 6380 >seq142225 Length=5922 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| || || ||||| | || | | || Sbjct 3172 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCTTC 3113 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| || ||||| || |||||||||||||| |||||||| || ||||| || Sbjct 3112 AGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGGC 3054 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || |||||||| |||||||||||||| ||||| ||||||| ||||||||||| Sbjct 4328 CTGATACTCTCCCACTCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTC 4269 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| || ||||| Sbjct 4268 CATGAAGTCAAACGGGTT 4251 >seq89243 Length=32234 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || ||||| |||||||| | ||||| ||| ||||| ||||| ||| Sbjct 15969 CTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATGGA 16028 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| || || ||||| |||||| |||||||||||| || |||| || || || Sbjct 16029 CTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATCGGGGCCAGGAGCAGGCT 16088 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 16089 GTTCCTCACACCATGC 16104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 |||||| || | ||||| ||||||||||||||| || ||||||||| | ||||| || Sbjct 17033 TGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTG 17092 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||| |||| | ||| |||||||||||||| |||| ||| ||||| ||| Sbjct 17093 GTTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTG 17152 Query 213647 GGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTG 213695 ||| || || |||| ||| || | | |||||| ||||| ||| || Sbjct 17153 TGAC-TCAATA-ATGGCATACCACAGCTGCTGGGCCTTCACCACACGCTTG 17201 >seq80509 Length=39056 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 ||| || ||||| |||||||| |||||||||||||| || | |||||| |||| || | Sbjct 16048 CACAAGTTCCCATCTGTTGGCAGAGAAGAGCAGGTGCACAGTGTGGTCCTCCAAATCACT 16107 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGG 39073 || |||||||||| | ||||||| || ||| ||||| ||| | ||||| || Sbjct 16108 TTTCTTCTCCAGGTAGGCACTGATCAGCTGTCCAATGGTGGTGCTCCTGTCTGG 16161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929715798696960