Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq104288 199 3e-45 seq109484 109 4e-18 seq130048 102 5e-16 >seq104288 Length=47184 Score = 199 bits (220), Expect = 3e-45 Identities = 562/850 (66%), Gaps = 16/850 (2%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| |||| || | ||| ||||||||||| |||| | ||||| ||||| Sbjct 1318 GAAGATGGCATTTTTGAAGTGAAAGCCACAGCTGGAGACACACACTTGGGTGGAGAAGAC 1259 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAA---AATAAAG 475454 ||||| ||| | | || | || | ||| || || || ||||| || || |||| Sbjct 1258 TTTGACAATCGCATGGTGAAGCAC--TTTGTCGATGAGTTTAAGAGAAAGTACAAGAAAG 1201 Query 475455 TTGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTA 475514 ||| || | | | ||| | || | || | || |||||||||||||| | Sbjct 1200 AC-ATCAGCCAGAACAAG--AGAGCGGTGAGGAGGCTACGCACGGCTTGTGAACGTGCCA 1144 Query 475515 AGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAA 475574 || | | || || || || ||| | | ||||| |||| ||||| | ||| |||| Sbjct 1143 AGAGGACCCTATCATCCAGCACCCAAGCAAGCATTGAAATTGACTCTCTATATGAGGGAA 1084 Query 475575 TTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTA 475634 |||| | | | || || || | || ||||||||| | || |||||||| | Sbjct 1083 TTGACTTTTACACCTCAATCACTCGCGCCCGATTTGAAGAACTCAACTCAGATCTCTTCA 1024 Query 475635 GAAAAACAATTGAACCCGTTGAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAA 475693 || ||| | || || ||||| || | || | | || | || || |||||||| ||| Sbjct 1023 GAGGCACACTAGACCCTGTTGAGAAA-TCCTTACAAGACGCCAAGCTGGACAAATC-CAA 966 Query 475694 G-TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCT 475752 | || | || ||||| || || || || || ||||||||||| ||||| | || |||| Sbjct 965 GATCAACGACATTGTCCTGGTGGGCGGATCCACAAGAATTCCCAAAATCCAAAAACTGCT 906 Query 475753 TTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTG 475811 | || || | |||||||| | | || || |||| | || || ||||||||||| | Sbjct 905 T-CAGGATTTCTTTAATGGAAGGGACTTGAACAAAAGCATTAACCCAGATGAAGCTGTAG 847 Query 475812 CATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATA 475871 | ||||||||||| ||||| || ||||| | || | | ||||| | | Sbjct 846 CTTATGGAGCTGCGGTCCAGGCTGCTATCCTGATGGGGGACACCTCTGAGAACGTCCAGG 787 Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 | | | || | || || ||||||| || || || |||| |||| || || | | Sbjct 786 ACCTCCTTCTGCTCGATGTTGCTCCACTGTCTTTGGGCATTGAGACAGCAGGTGGAGTAA 727 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991 |||| || || | | || || ||||||| |||| || | | | || |||| Sbjct 726 TGACGGCGCTGATCAAACGTAACACCACTATCCCCACCAAACAAACCCAGATCTTCTCCA 667 Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051 |||| || ||||| || | ||| |||||| | |||||||||||||| | | Sbjct 666 CTTACTCCGATAACCAGCCGGGTGTGCTCATCCAGGTGTTTGAAGGTGAAAGGGCCATGA 607 Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111 |||||||||| ||| ||||| | ||| | || ||| || || || || || |||| Sbjct 606 CTAAAGATAACAACCTCCTTGGCAAGTTTGACCTGACAGGGATCCCACCAGCCCCAAGAG 547 Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTG 476171 |||| || || || || || || ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 546 GAGTCCCGCAGATCGAGGTAACATTTGACATCGATGCTAATGGCATTCTCAATGTATCTG 487 Query 476172 CTTGTGATAA 476181 || ||| || Sbjct 486 CTGTTGACAA 477 Score = 176 bits (194), Expect = 3e-38 Identities = 374/554 (68%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || || | || || || ||| ||||| | || | || | | Sbjct 1944 GAATCTCCATTGGCATCGACCTGGGGACCACCTACTCCTGTGTGGGCGTCTTCCAGCACG 1885 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || |||||||||||||| || || | || || || ||||| | | Sbjct 1884 GCAAAGTGGAGATTATTGCCAATGACCAGGGCAACCGCACCACGCCCAGTTATGTCGCCT 1825 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || || || || || || || || || ||| | || | || || || | Sbjct 1824 TCACCGACACCGAGAGGCTAATCGGCGACGCAGCCAAAAACCAGGTGGCCATGAACCCAG 1765 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 ||| || || || || || || ||| | || || | || |||||||| | | ||| | Sbjct 1764 CTAACACCATCTTCGACGCCAAGAGACTCATCGGGAGAAAATTTGATGACCCTATTGTGC 1705 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | |||| ||| | ||||||||| || ||||| | || || || || || | || Sbjct 1704 AGGCTGACATGAAGCTTTGGCCTTTCAAAGTGATCAGTGACGGCGGCAAGCCCAAAGTAC 1645 Query 474624 AAGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 ||| | |||| |||||| || || ||||| || ||| |||| || |||||||| Sbjct 1644 AAGTGGAGTACAA--AGGTGAGACGAAGGCATTTTATCCAGAAGAAATCTCATCAATGGT 1587 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 ||| | || |||||| ||| ||| ||| | ||| | || || ||| | | |||| Sbjct 1586 TTTGGTTAAGATGAAAGAAATCGCAGAGGCC-TATTTGGGGCAGAGAGTGTCCAACGCAG 1528 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || || || ||||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 1527 TCATCACAGTCCCTGCTTATTTCAATGACTCCCAACGCCAAGCCACAAAAGACGCTGGAG 1468 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||| | ||||| ||||| | | || || ||||||||||| ||||| || |||| | Sbjct 1467 TTATTTCTGGTCTAAATGTCCTGAGAATCATCAATGAACCAACTGCAGCAGCTATTGCAT 1408 Query 474861 ATGGTCTTGATAAG 474874 ||||||| || ||| Sbjct 1407 ATGGTCTAGACAAG 1394 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 |||||||||| | | ||||| ||||||||||| || ||||| | |||| ||||| Sbjct 1401 AGACCATATGCAATAGCTGCTGCAGTTGGTTCATTGATGATTCTCAGGACATTTAGACCA 1460 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 | ||| | | | ||| || || |||||||| | ||||| ||||||||||||||| Sbjct 1461 GAAATAACTCCAGCGTCTTTTGTGGCTTGGCGTTGGGAGTCATTGAAATAAGCAGGGACT 1520 Query 290945 GTAATAACAGCTTTTTCCACTTTCTTTTTCAAATAATTTTCTGCCATTTGTTTTAT 291000 || || || || || |||| ||| |||||| ||||| |||| ||| || Sbjct 1521 GTGATGACTGCGTTGGACACTCTCTGCCCCAAATAGGCCTCTGCGATTTCTTTCAT 1576 >seq109484 Length=39712 Score = 109 bits (120), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || || || || ||||| || || ||||| || || ||||||| Sbjct 33858 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGTCAGGCGACCAAAGATG 33799 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || |||||||| | |||||||| ||||||||||||||||| || Sbjct 33798 CTGGAGCTATTGCCGGGCTTAATGTGCTGCGTATTATCAATGAACCAACAGCAGCAGCCA 33739 Query 474855 TTGCTTATGGTCTTG 474869 |||| ||||| |||| Sbjct 33738 TTGCCTATGG-CTTG 33725 Score = 86.0 bits (94), Expect = 4e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| || | || ||||| || |||| || |||| ||| | || || Sbjct 32736 TGAAGGTGAGAGGGCCATGACCAAAGACAACAACATCCTGGGAAAGTTTGAGCTCACTGG 32677 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||| || |||||||| |||| || || || ||||| || || ||||| ||||| || || Sbjct 32676 TATCCCACCTGCTCCACGAGGTGTCCCCCAGATTGAGGTGACCTTTGACATTGACGCCAA 32617 Query 476152 TGGTATTCTTAATGT 476166 ||||||||||||||| Sbjct 32616 TGGTATTCTTAATGT 32602 >seq130048 Length=4274 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | ||| ||||| || || || ||||| || || | || ||||| || ||| Sbjct 2437 AGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2496 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || || ||||||||||| ||||| || || ||||||||| ||| || | | Sbjct 2497 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACC 2556 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || |||||||||||||| ||||| || || ||||| Sbjct 2557 TCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTG 2600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261485715714512