Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq77734 226 3e-54 seq89243 105 8e-18 seq62746 95.1 1e-14 >seq77734 Length=62899 Score = 226 bits (250), Expect = 3e-54 Identities = 938/1453 (65%), Gaps = 34/1453 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||| ||||| | || || | || |||||| || ||||| | | | Sbjct 10658 CCACAACATATGCTCATGAGAGTAGCTGTTGGAATCCACAAAACTGATATTGACGCGGCC 10717 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||| || | || || || || Sbjct 10718 ATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGTT 10776 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || |||||| |||| ||| | ||||| |||||||| | |||| ||||| Sbjct 10777 CAACGCAGG--CACCAACAGACCCCAGCTCTCCAGCTGCTTCCTACTGGCCATGAAGGAT 10834 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || || |||| || || | | ||||| | |||||||| | || Sbjct 10835 GACAGCATTGAAGGCATTTATGACACACTCAAACAATGTGCACTCATCTCAAAATCTGCA 10894 Query 75449 GGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCA-ATAAATCTCGTATTCGGGGGA 75506 || || ||||| | ||| | || | ||| | | | | || ||| || | Sbjct 10895 GGAGGGATTGGTGTAGCAGTTAGCTGCATT-AGATCAACAGGTAGCTAC-ATTGCAGGAA 10952 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 |||||||| | ||| |||| || | |||||||| | || | |||| |||||| || | Sbjct 10953 CAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTATAACAACACAGCACGTT 11012 Query 75567 ATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | || | |||| || | || ||| || | || | ||| |||| ||||||| Sbjct 11013 ACGTGGACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATGTACCTGGAGCCATGGC 11072 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | || | | || |||||||||||| ||| ||| | || ||| || Sbjct 11073 ACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAAAACACTGGTAAAGAGGAGCAGAGGG 11132 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 |||| ||||| | |||| ||||| || || | ||||||||| |||| || | Sbjct 11133 CACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACA 11192 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCC-AGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 | |||||| | | || || || | || || || || || | | |||| Sbjct 11193 ACCAGGACTGGTCTTTGATGTGCCCCAGTGAGTGC-CCTGGGCTGGATGA-GTGTTGGGG 11250 Query 75803 G-AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 | |||||||||| || ||||| || || ||||||| |||| || | || Sbjct 11251 GGAGGAGTTTGAGAAGCTGTACACGCGCTACGAGCAGGAGGGCAGAGTGAAACGGGTAGT 11310 Query 75862 ACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | | | | || ||| | || || | | || ||||| ||||| ||||| || | Sbjct 11311 -CAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACAGAGACAGGAACTCCTT 11369 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||| | ||||| ||||| ||||||| |||||||||||| |||||||||| || |||| Sbjct 11370 ACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCATCA 11429 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 | || || | ||||| || ||| | ||||| ||| | |||||| ||||| | Sbjct 11430 AATGCAGTAACTTGTGCACAGAGATTGTGGAGTATACAAGCCAAGATGAGGTAGCTGTGT 11489 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 | || ||||| || || || || | |||||| | | ||| || || ||||| | Sbjct 11490 GTAACTTGGCTTCTATTGCACTCAACATGTATGTAACTCCAGA---ACGGACCTTTGACT 11546 Query 76101 ATGAAAAACTTCATGAAATCAC-AAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 |||| ||| | |||| |||| ||||| | ||| || ||| |||||| Sbjct 11547 TCAAAAAGCTTGCCTCAGTCACTAAAGTAATTGT---AAGAAACCTCAACAAGATCATTG 11603 Query 76158 ACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATT 76216 ||| ||| | || || ||| ||| ||| || || || | || ||||| |||||| Sbjct 11604 ACATAAACTACTACCCAGTTCCAGA-GGCGGAGAACTCAAACAGACGCCACAGGCCTATT 11662 Query 76217 GGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCA 76276 || | ||||| || |||||||| |||| || ||| | || || ||||||| Sbjct 11663 GGAATTGGTGTGCAGGGTCTCGCAGATGCCTTCATTCTCATGCGTTATCCATTTGAAAGT 11722 Query 76277 GATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 ||||||| || | ||||| | |||||||| ||||| || | || || ||||| Sbjct 11723 CCTGAAGCCCAGCTGCTGAATATCCAGATCTTTGAGACCATCTACTATGCTGCCTTGGAG 11782 Query 76337 GCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCG 76396 | || ||||| || || ||| | || | |||||||| | |||||||| | | Sbjct 11783 TCAAGCTGTGAGTTAGCAGAAAAAGATGGGCCTTATGAGACCTACCCAGGTTCTCCAGTG 11842 Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGG--GAAGGTGAAACCAAGCTCAACTACGACT 76454 | || | || |||| || |||||| |||||| | | | || || |||| Sbjct 11843 AGTAAGGGCATTCTGCAGTACGACATGTGGGAGAAGGT--ACCGACTCTGCTCTGGGACT 11900 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 || | | || ||||| || | | ||| | | ||||| | ||| |||| | Sbjct 11901 GGAAACTGCTTAAGGAGAAGATAGCTAAACATGGTATAAGGAACAGCTTGTTGTTGGCCC 11960 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| || |||||||| |||||||| |||||||||||||| | | | ||| | |||| Sbjct 11961 CCATGCCTACTGCCTCCACAGCACAAATATTGGGTAATAATGAGTCCATCGAAGCCTACA 12020 Query 76575 CAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACC 76634 | | ||||||||| | ||| |||| | || |||||| || || ||| || | Sbjct 12021 CTAGCAACATCTACACACGCAGAGTCCTCTCCGGAGAGTTTCAGATCGTAAACCCACATC 12080 Query 76635 TCGTCAATGACCT 76647 | |||| ||||| Sbjct 12081 TGCTCAAGGACCT 12093 >seq89243 Length=32234 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || ||| | | |||||||| ||||| || || ||||| ||||| ||||| ||| Sbjct 17173 TGGTATGCCATTATTGAGTCACAGACCGAGACGGGGACCCCATACATGCTCTACAAAGAT 17114 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||||||||| ||||||| || || ||||| | || || ||| Sbjct 17113 GCATGCAACAGGAAGAGTAACCAGCAGAATTTAGGCACCATCAAATCCAGCAACCTGTGC 17054 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||| |||| |||||| || |||||| Sbjct 17053 ACTGAGATTGTAGAATACACAAGCAAAGATGAG 17021 >seq62746 Length=64918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/123 (80%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 |||||||| ||| ||||| || |||||||| || || || ||| |||||||||||| | Sbjct 62025 GCGTTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATCCTT-TGCTGCTATTTATTGGCT 62083 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT-CTCAAATGAACTTATTTCCCGAGATG 65206 ||| ||| ||||||| ||||| ||||| | ||| || ||||||||||| | |||||| Sbjct 62084 GAAAAAGAGGGGTCTAATGCCTGGCCT-TACTTATTCCAATGAACTTATCAGCAGAGATG 62142 Query 65207 AGG 65209 ||| Sbjct 62143 AGG 62145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595405961166720