Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq77734 136 1e-26 seq89243 113 1e-19 >seq77734 Length=62899 Score = 136 bits (150), Expect = 1e-26 Identities = 612/954 (64%), Gaps = 18/954 (2%) Strand=Plus/Minus Query 155569 TTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTC--CTTGTCGTC 155626 ||||| |||| || ||||||| |||| ||||| || || ||| |||| | | Sbjct 11525 TTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTG 11466 Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 | || || |||||||| ||||| |||| | ||||||||||| ||||||| ||| Sbjct 11465 --TATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTG 11408 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 |||| || |||||||| ||||| ||||| | ||||| || ||||||||||| |||| Sbjct 11407 GTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTG 11348 Query 155747 TGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 | || | || ||| | | | || || | | | || |||||| || Sbjct 11347 AGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACTACCCGTTTCACTCTGCCCTC 11288 Query 155807 CGACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||| || | | |||||| ||| || ||||| || |||| ||| ||| |||| Sbjct 11287 CTGCTCGTAGCGCGTGTACAGC-TTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAG 11229 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAA 155923 |||||| | |||||| | || ||||| | || || ||| ||| ||| || Sbjct 11228 GGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTT--GTTTTCCACCCTCTTCATGAA 11171 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GT 155982 | |||| ||| | |||||||| ||||| | |||| | |||||| | || || Sbjct 11170 CAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGT 11111 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | || ||| || ||| | ||| || | ||| || ||||||||| ||||| | Sbjct 11110 G-TTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGG 11052 Query 156043 CAAA-ACTACCATTC--CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 |||| | || || | |||||||| || || || || || || || || || | | Sbjct 11051 CAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACA 10992 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 | | ||||| || | || ||||| ||| | ||||| ||||| ||| | ||| | Sbjct 10991 CCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTG 10932 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 ||| | || || || ||||| || |||| |||| || || | || | Sbjct 10931 TTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCAC 10872 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 ||| || | || | |||| |||||||| ||||| | ||| | ||||| ||| Sbjct 10871 ATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGC 10812 Query 156280 ACGAACTTAATTGAGGTC-GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 | | || |||| || | || || |||||||| || || || | |||||| | Sbjct 10811 AGCTGGAGAGCTGGGGTCTGTTG-GTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTG 10753 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGA 156398 || |||| | ||||| | ||| ||||| | | |||| || || ||| Sbjct 10752 AACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGG 10693 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 || | | || || ||||| |||||| || |||||||| | | ||||| ||| Sbjct 10692 ATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATT 10633 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAA 156512 ||| ||||| | ||| || || |||||||| || || ||| | | |||||| Sbjct 10632 TTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAGAAATTATA-AGAAAA 10580 >seq89243 Length=32234 Score = 113 bits (124), Expect = 1e-19 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| Sbjct 17035 TGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGT 17094 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 || || ||||| || ||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 17095 TACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTG 17154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468874974834828