Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq145654 179 5e-39 seq124879 176 5e-38 seq78755 176 5e-38 seq153270 152 6e-31 seq76472 149 8e-30 seq127410 104 3e-16 seq136067 91.5 2e-12 >seq145654 Length=6259 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 2494 GCTTGGCCAGTTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 2435 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| |||||||| |||| | Sbjct 2434 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGA 2375 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2374 TGTCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 2315 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 2314 GCACCTGCTTGAGCACCTTGTA 2293 >seq124879 Length=4012 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 602 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 543 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| |||||||| |||| | Sbjct 542 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGA 483 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 482 TGTCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 423 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 422 GCACCTGCTTGAGCACCTTGTA 401 >seq78755 Length=20053 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 18279 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 18220 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| |||||||| |||| | Sbjct 18219 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGA 18160 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 18159 TGTCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 18100 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 18099 GCACCTGCTTGAGCACCTTGTA 18078 >seq153270 Length=14643 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||||||||||||||||||||| | | | || Sbjct 1686 GCTTGGCCAGCTCTCCGGGGAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 1745 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || ||||||| ||| |||||| ||||| | |||| | Sbjct 1746 TGGTGGAGCGCTTGTTGTAGAGCGCCAGGCGGGAGGCCTCTCCTCCGATCCTCTCGAAGA 1805 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 1806 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCTTTGGAGGAGATGCCGGTGTCGGGGT 1865 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 1866 GCACCTGCTTGAGCACCTTGTA 1887 >seq76472 Length=19010 Score = 149 bits (164), Expect = 8e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||||||||||||||||||||| | | | || Sbjct 3221 GCTTGGCCAGCTCTCCGGGGAGTAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 3280 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||| | |||| | Sbjct 3281 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCTCCGATCCTCTCGAAGA 3340 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3341 TGTCGTTGACGAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 3400 Query 1254523 GCACCTGCTTGAGCA 1254537 ||||||||||||||| Sbjct 3401 GCACCTGCTTGAGCA 3415 >seq127410 Length=24526 Score = 104 bits (114), Expect = 3e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || || || |||||||| | ||| || || || Sbjct 11035 GCTTGGCCAGCTCCCCGGGCAGGAGGAGCCGGACCGCGGTCTGCACCTCTCGGCTGGTGA 11094 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | ||||||| ||| || || ||| |||| | |||| || Sbjct 11095 TGGTGGAGCGCTTGTTGTACTGCGCCAATCGGGACGCTTCCGTGGCGATCCTCTCGAACA 11154 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | ||||||||||| ||| || | Sbjct 11155 GGTCGTTGACGAAGGAGTTCATGATGCTCATCGCTCGGCTGGAGATGCCCGTGTCCGGAT 11214 Query 1254523 GCACCTG 1254529 | ||||| Sbjct 11215 GTACCTG 11221 >seq136067 Length=18002 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||||| ||||| ||| ||| | || | ||| || ||||||||||| Sbjct 9996 GCGGCGAATTACCTGGACATTAAGGGTCTTTTGGACGTGACGTGTAAAACTGTGGCCAAC 10055 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | |||||||||||| | ||||| |||||||||||| ||| Sbjct 10056 ATGATCAAAGGAAAGACCCCCGAGGAGATCAGGAAGACGTTTAACATCAAGAACG 10110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6094333498605948