Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq145654 233 3e-55 seq78755 233 3e-55 seq124879 232 1e-54 seq153270 217 2e-50 seq76472 201 2e-45 seq127410 159 5e-33 seq142225 87.8 3e-11 >seq145654 Length=6259 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| |||||||||| ||| ||| Sbjct 2533 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGTTCTCCGGGCA 2474 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 2473 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 2414 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| |||||||| |||| ||||||||||| || ||||||| Sbjct 2413 GCGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 2354 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 2353 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTGT 2294 Query 1485710 AAAC 1485713 | || Sbjct 2293 ACAC 2290 >seq78755 Length=20053 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 18318 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 18259 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 18258 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 18199 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| |||||||| |||| ||||||||||| || ||||||| Sbjct 18198 GCGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 18139 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 18138 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTGT 18079 Query 1485710 AAAC 1485713 | || Sbjct 18078 ACAC 18075 >seq124879 Length=4012 Score = 232 bits (256), Expect = 1e-54 Identities = 197/243 (81%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 640 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCAG 581 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | | Sbjct 580 CAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTG 521 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 |||||||||| |||||| |||||||| |||| ||||||||||| || |||||||| Sbjct 520 CGCCAGGCGGGAGGCCTCTCCTCCGATGCGCTCGAAGATGTCGTTGACGAAAGAGTTCAT 461 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| | ||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 460 GATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTGTA 401 Query 1485711 AAC 1485713 || Sbjct 400 CAC 398 >seq153270 Length=14643 Score = 217 bits (240), Expect = 2e-50 Identities = 197/248 (79%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| ||||||| || ||| | | Sbjct 1647 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGGA 1706 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 1707 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGA 1766 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| ||||| | |||| ||||||||||| || ||||||| Sbjct 1767 GCGCCAGGCGGGAGGCCTCTCCTCCGATCCTCTCGAAGATGTCGTTGACGAAGGAGTTCA 1826 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1827 TGATGCTCATGGCTTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTGT 1886 Query 1485710 AAACAAAG 1485717 | ||| || Sbjct 1887 ACACATAG 1894 >seq76472 Length=19010 Score = 201 bits (222), Expect = 2e-45 Identities = 185/234 (79%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 3182 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGGA 3241 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 3242 GTAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 3301 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| ||||| | |||| ||||||||||| || ||||||| Sbjct 3302 GCGCCAGGCGGGAGGCCTCTCCTCCGATCCTCTCGAAGATGTCGTTGACGAAAGAGTTCA 3361 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 |||| ||| | ||| ||||||||| ||||||||||||||||||||||| Sbjct 3362 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCA 3415 >seq127410 Length=24526 Score = 159 bits (176), Expect = 5e-33 Identities = 173/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 10996 TGTACTTTGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 11055 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || |||||||| | ||| ||| || ||| ||| ||||||||| || | Sbjct 11056 GGAGGAGCCGGACCGCGGTCTGCACCTCTCGGCTGGTGATGGTGGAGCGCTTGTT-GTAC 11114 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||| ||| || || ||| |||| | |||| || ||||||||| || |||||| Sbjct 11115 TGCGCCAATCGGGACGCTTCCGTGGCGATCCTCTCGAACAGGTCGTTGACGAAGGAGTTC 11174 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||||| | | ||||||||||| ||| || || ||||| Sbjct 11175 ATGATGCTCATCGCTCGGCTGGAGATGCCCGTGTCCGGATGTACCTG 11221 >seq142225 Length=5922 Score = 87.8 bits (96), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||| ||||||||||||||| || ||| |||||||||||||||| || ||||| Sbjct 2235 GTCCTTGATGTAGGTGTCGATGAGCAGACTGTACATCTCTGAGTGGATGTTCTCCATGGC 2176 Query 794646 GATCTGGAAGCCATAAAAGCA 794666 ||||||||| || || || || Sbjct 2175 GATCTGGAACCCGTAGAAACA 2155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7899647288003316