Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq104288 336 2e-86 seq109484 91.5 1e-12 >seq104288 Length=47184 Score = 336 bits (372), Expect = 2e-86 Identities = 946/1442 (66%), Gaps = 24/1442 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| ||||| ||||| ||||| ||||| | |||||||| || || || Sbjct 477 TTGTCAACAGCAGATACATTGAGAATGCCATTAGCATCGATGTCAAATGTTACCTCGATC 536 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || ||||| ||||| | || |||||||||||| || | ||| | || || || Sbjct 537 TGCGGGACTCCTCTTGGGGCTGGTGGGATCCCTGTCAGGTCAAACTTGCCAAGGAGGTTG 596 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 ||||||||||| | | |||||| || || | ||||| || | | || ||| Sbjct 597 TTATCTTTAGTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCCGGCTGGTTA 656 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || || ||||| | || | ||||| ||| ||| || || || ||||| | | || Sbjct 657 TCGGAGTAAGTGGAGAAGA-TCTGGGTTTGTTTGGTGGGGATAGTGGTGTTACGTTTGAT 715 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 | ||||| | ||||| ||||| || | || | ||| || |||| ||||| | Sbjct 716 CAGCGCCGTCATTACTCCACCTGCTGTCTCAATGCCCAAAGACAGTGGAGCAACATCGAG 775 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 || | | | || | || ||| || | || | || ||||| || || | || Sbjct 776 CAGAAGGAGGTCCTGGACGTTCTCAGAGGTGTCCCCCATCAGGATAGCAGCCTGGACCGC 835 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 ||| ||||| || ||||||||||| || |||| ||| || | | | ||||| || Sbjct 836 AGCTCCATAAGCTACAGCTTCATCTGGGTTAATGCTTTTGTTCAAGTCCCTTCCATTAAA 895 Query 281836 AAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||| |||| | | || ||||| | | ||||| || || | ||||| Sbjct 896 GAAATCCTGAAGCAGTTTTTGGATTTTGGGAATTCTTGTGGATCCGCCCACCAGGACAAT 955 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || | | || ||||| ||||| || | || ||| ||| ||||| || || || Sbjct 956 GTCGTTGATCTTGGATTTGTCCAGCTTGGCGTCTTGTAAGGATTTCTCAACAGGGTCTAG 1015 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 |||| || | ||||| |||||||| ||| || | ||| || ||| | Sbjct 1016 TGTGCCTCTGAAGAGATCTGAGTTGAGTTCTTCAAATCGGGCGCGAGT--GATTGAGGTG 1073 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || |||||||| || | | ||| |||| |||||| | | ||| || || ||| Sbjct 1074 TAAAAGTCAATTCCCTCATATAGAGAGTCAATTTCAATGCTTGCTTGGGTGCTGGATGAT 1133 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGA 282129 || | | || ||||||||||| || || | ||| || | | ||| | | ||| Sbjct 1134 AGGGTCCTCTTGGCACGTTCACAAGCCGTGCGTAGCCTCCTCACCGCTCTCTTGTTCTGG 1193 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 |||| ||| | || || |||||||| || || || ||| | | || | || Sbjct 1194 CTGATG----TCTTTCTTGTACTTTCTCTTAAACTCATCGACAAAGTGCTTCACCATGCG 1249 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||| ||||| ||||| || ||||| | || | ||| | || ||| | |||| |||| Sbjct 1250 ATTGTCAAAGTCTTCTCCACCCAAGTGTGTGTCTCCAGCTGTGGCTTTCACTTCAAAAAT 1309 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||||||||| | || || | || || || || || |||| |||||| || || Sbjct 1310 GCCATCTTCAATCGTCAGAATGGACACGTCGAAAGTGCCGCCGCCCAGATCAAAGATGAG 1369 Query 282310 TACATTCATTTCTTTGTCTTGGTTT----TTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 ||||| || | | | ||| || || |||||||| |||| ||| || |||| Sbjct 1370 AACATT----TCGCTCCCCTCTTTTCCCCTTGTCTAGACCATATGCAATAGCTGCTGCAG 1425 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 |||||||||| || ||||||| ||||| ||||||| ||| ||| || ||||| |||| Sbjct 1426 TTGGTTCATTGATGATTCTCAGGACATTTAGACCAGAAATAACTCCAGCGTCTTTTGTGG 1485 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCT 282484 |||| | ||| || || || ||||| ||||| || || || || || | | ||| ||| Sbjct 1486 CTTGGCGTTGGGAGTCATTGAAATAAGCAGGGACTGTGATGACTGCGTTGGACACTCTCT 1545 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 |||| ||| || ||| ||| |||||| ||| |||| ||||||||| |||| | Sbjct 1546 GCCCCAA-ATAGGCCTCTGCGATTTCTTTCATCTTAACCAAAACCATTGATGAGATTTCT 1604 Query 282545 TCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||||| || || ||| | ||| || || |||| | | || || || Sbjct 1605 TCTGGATAAAATGCCTTCGTCTCACCTTTGTACTCCACTTGTACTTTGGGCTTGCCGCCG 1664 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 || | || ||||| || |||||| ||||| || | || ||| | |||||| ||| Sbjct 1665 TCACTGATCACTTTGAAAGGCCAAAGCTTCATGTCAGCCTGCACAATAGGGTCATCAAAT 1724 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 | ||| || || | || || || || || || || || | ||| || | || | || Sbjct 1725 TTTCTCCCGATGAGTCTCTTGGCGTCGAAGATGGTGTTAGCTGGGTTCATGGCCACCTGG 1784 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | ||||||||| || || || || || || || || || | ||||| || || Sbjct 1785 TTTTTGGCTGCGTCGCCGATTAGCCTCTCGGTGTCGGTGAAGGCGACATAACTGGGCGTG 1844 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 ||||| || || || ||||| |||||||| || ||||| || | || | || || ||| Sbjct 1845 GTGCGGTTGCCCTGGTCATTGGCAATAATCTCCACTTTGCCGTGCTGGAAGACGCCCACA 1904 Query 282845 CA 282846 || Sbjct 1905 CA 1906 >seq109484 Length=39712 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| || || || ||||||||||| ||||| | || ||| Sbjct 33717 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATAATACGCAGCACA 33776 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| || ||||| ||| |||||||| || || || | || || || || || || Sbjct 33777 TTAAGCCCGGCAATAGCTCCAGCATCTTTGGTCGCCTGACGCTGGGAGTCATTGAAGTAG 33836 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | ||| |||| |||| Sbjct 33837 GCAGGGACAGTTACAACTGCAT-TGTT 33862 Score = 87.8 bits (96), Expect = 1e-11 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || ||| || || ||||| || || ||| ||| ||| || |||| | |||||| Sbjct 32547 ATCATTGGTGATGGTAATCTTGTTTTCTTTCCCTGTGCTTTTGTCCACGGCTGACACATT 32606 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||||||||||||| || | ||||| || || ||||| || ||||| |||| |||| Sbjct 32607 AAGAATACCATTGGCGTCAATGTCAAAGGTCACCTCAATCTGGGGGACACCTCGTGGAGC 32666 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||||||||| || | | ||| ||||||| | || || ||||| || Sbjct 32667 AGGTGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTGGT 32717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732969299041944