Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq68009 116 4e-21 >seq68009 Length=22128 Score = 116 bits (128), Expect = 4e-21 Identities = 237/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || || |||| | |||||||||||| ||||| ||| ||| | | Sbjct 17973 GCCAGCTCTTTGGGTGAGCTGAAGTCATCCACGTGAATGAAGGCGTCCCCCTGGAGGAAG 18032 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || |||| || | | || || || | ||| || | |||| ||| | Sbjct 18033 TTCTCATAGTTCTGCCTGGGGGGGCCCAGGACCACGGGCACTG----TGCCCACAGACAG 18088 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || || ||||| || || || |||||| |||| | |||||||||||| || || || Sbjct 18089 GGGGTTGTACAGTTTCTCTGTGATGTAGTCCTTGTGGATGGAGTTCTCAAAGGCCAGGTA 18148 Query 177122 GAATTTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 |||||| ||| | | | |||| | |||| | |||| || || ||||| | | Sbjct 18149 GAATTTGCAGCTGGCCATTGTGGGGAAGTAGTCCTGGTCGGAGATGTACTCTCCAAAGGC 18208 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCA 177240 | || || | |||| || ||||| || |||||| ||| || || || | | Sbjct 18209 CTGTCCATAGGCGTGTACCTCAATGTGCTTGTAGAGCTCATTGTAATA-CTTGACCCGTA 18267 Query 177241 CGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||||||| | |||||| |||||||||| |||||| | | |||| |||| Sbjct 18268 CGTGGTCCTGGTTCCAGTTGCTGACGATCCAGCAGATGAGCTTGTTCTT 18316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577303739462400