Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq77734 109 5e-19 seq130048 95.1 1e-14 >seq77734 Length=62899 Score = 109 bits (120), Expect = 5e-19 Identities = 436/673 (65%), Gaps = 19/673 (3%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||||||| | | || | ||||||||||| || |||||||| || |||| || ||| Sbjct 12027 TTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTA 11968 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 |||||| |||| |||||| || | | ||| | | || || ||||| | Sbjct 11967 GGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGC 11908 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTC---CACATGTCGTACTGGAGCAC 147113 ||||| ||||||||| | | ||| || || ||| |||||||||||||| || | Sbjct 11907 AGTTT-CCAGTCCCAGAGCA--GAGTCGGT-ACCTTCTCCCACATGTCGTACTGCAGAAT 11852 Query 147114 TCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTC 147173 || ||| | ||| || | | | || || || || | || || || Sbjct 11851 GCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTC 11792 Query 147174 ACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGT 147233 |||||||| ||| | || ||||||| ||||| || ||| || | || || | Sbjct 11791 ACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTG 11732 Query 147234 CGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGAT 147293 ||||| || || | || ||||| || | |||||||| || | |||||| | Sbjct 11731 GGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCAC 11672 Query 147294 ACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCG-CTCGCTATGGGATAGT 147352 ||| | || ||||| | || | ||| | || ||| || | |||| |||| Sbjct 11671 ACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGG-TAGT 11613 Query 147353 GGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTT 147412 ||| ||||| |||||||||||||| | || | |||||||| | || || | Sbjct 11612 AGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCT 11553 Query 147413 TCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCACGGCGATAGACGCC 147471 | | ||| ||| | |||| ||| | || || ||| ||| | || ||||| ||| Sbjct 11552 TTTTGAAGTCAAAGGTCCGTTCTGGAGTTACATA--CAT--GTTGAGTGCAATAGAAGCC 11497 Query 147472 AGATTGCAGACGGCCGTCTCTTC--GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGT 147529 | || || || || ||| || ||| | | |||| ||| || || | ||||| || Sbjct 11496 AAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCTCTGTGCACAAGT 11439 Query 147530 TGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGA 147589 | |||||||| ||| |||||||| ||||| || || |||| || || || |||||| Sbjct 11438 TACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGT 11379 Query 147590 AGAGCATGTACGG 147602 | | |||||| || Sbjct 11378 ACAACATGTAAGG 11366 >seq130048 Length=4274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| || |||||||||||| | ||| || Sbjct 2161 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 2220 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| ||||||||||| |||||||| || Sbjct 2221 TCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTG 2280 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || ||| | |||||||| || | || | Sbjct 2281 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 2340 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | || |||||||| Sbjct 2341 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| || || || | | |||| ||||| || |||||||||||| | || || Sbjct 2388 GCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 2447 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || |||||||| |||| | |||| || | ||| |||||||| || ||||| || || Sbjct 2448 ATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTT 2507 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | ||| | ||| || | ||||| || || | || | Sbjct 2508 GTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGAT 2567 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| || || || || | || || |||||| Sbjct 2568 GGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATG 2604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475681546023840