Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq145654 197 2e-44 seq124879 194 2e-43 seq78755 194 2e-43 seq153270 172 8e-37 seq76472 167 3e-35 seq127410 120 4e-21 seq142225 98.7 1e-14 >seq145654 Length=6259 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 2293 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 2346 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| |||||||| |||||| ||| Sbjct 2347 AGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGGAGGAGAGGCCTCCCGC 2406 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 2407 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 2466 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 2467 CTCCTGCTGCCCGGAGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2515 >seq124879 Length=4012 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 401 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 454 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| |||||||| |||||| ||| Sbjct 455 AGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGGAGGAGAGGCCTCCCGC 514 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 515 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 574 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 575 CTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 623 >seq78755 Length=20053 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 18078 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 18131 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| |||||||| |||||| ||| Sbjct 18132 AGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGGAGGAGAGGCCTCCCGC 18191 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 18192 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 18251 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 18252 CTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 18300 >seq153270 Length=14643 Score = 172 bits (190), Expect = 8e-37 Identities = 175/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| |||| |||| ||| ||| ||||| Sbjct 1887 TACAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAAGCCATG 1834 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| | ||||| |||||| ||| Sbjct 1833 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGAGGATCGGAGGAGAGGCCTCCCGC 1774 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 1773 CTGGCGCTCTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 1714 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| || ||||||| ||||||||| ||||||||||| Sbjct 1713 CTCCTGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1667 >seq76472 Length=19010 Score = 167 bits (184), Expect = 3e-35 Identities = 171/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 724921 TGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCA 724980 |||||||||||||||||||| |||| |||| ||| |||| ||||| |||| Sbjct 3415 TGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATGAGCATCA 3362 Query 724981 TGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGC 725040 ||||||| || ||||||||||| |||| | ||||| |||||| |||||||||| Sbjct 3361 TGAACTCTTTCGTCAACGACATCTTCGAGAGGATCGGAGGAGAGGCCTCCCGCCTGGCGC 3302 Query 725041 GCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCA 725100 || |||||||||| ||| ||| | | | ||||||||||||||||||||||| | Sbjct 3301 ACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTCCTAC 3242 Query 725101 TGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3241 TCCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3200 >seq127410 Length=24526 Score = 120 bits (132), Expect = 4e-21 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||||| || ||||||||| || |||| | |||| ||| || || || || Sbjct 11179 ATCATGAACTCCTTCGTCAACGACCTGTTCGAGAGGATCGCCACGGAAGCGTCCCGATTG 11120 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| | |||||||||| ||| ||| || || ||| | |||||||| || || || Sbjct 11119 GCGCAGTACAACAAGCGCTCCACCATCACCAGCCGAGAGGTGCAGACCGCGGTCCGGCTC 11060 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 11059 CTCCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 11014 >seq142225 Length=5922 Score = 98.7 bits (108), Expect = 1e-14 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | ||||| || || | ||||| || | || |||||||||||||||||| Sbjct 2119 CGCTTCATGCAGGAGGTGCAGGTGACGGAGGCTCGGTGTTTCTACGGGTTCCAGATCGCC 2178 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || | ||| || || |||||||||||| |||||||| Sbjct 2179 ATGGAGAACATCCACTCAGAGATGTACAGTCTGCTCATCGACACCTACATCAAGGAC 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7162760469391128