Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq77734 628 3e-175 seq62746 123 3e-23 seq89243 118 1e-21 >seq77734 Length=62899 Score = 628 bits (696), Expect = 3e-175 Identities = 1294/1907 (68%), Gaps = 23/1907 (1%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| || || || || ||||| || || || | ||||| || ||||| || || Sbjct 12084 AGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTG 12025 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || | ||| | || |||||||| |||| ||||| || || || ||||| ||| Sbjct 12024 CTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGC 11965 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877 || || |||| ||| || || || || | ||||||| | || || || || || || Sbjct 11964 ATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGT 11905 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 ||||| ||||| || || ||||| | ||| | ||||| || ||||| || ||| Sbjct 11904 TTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTA 11845 Query 68938 CTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTT 68997 || | || || || || |||||||| || || | ||| |||| ||||| ||| Sbjct 11844 CTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTT 11785 Query 68998 GCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT 69057 | ||| || ||| | || || || || || || |||| |||| || || ||||| Sbjct 11784 GACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCA 11725 Query 69058 AGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATA 69117 |||| || ||||||||| | | ||||| || |||||||| | ||||| || ||||| Sbjct 11724 GGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATT 11665 Query 69118 CCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATA 69177 || ||||| || || | | ||||| | || || ||||||| || || || || || Sbjct 11664 CCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATG 11605 Query 69178 TCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 69237 || || || || || || |||| || | ||||||| || || || || Sbjct 11604 TCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAG 11545 Query 69238 TCAAATCGTCCAT-CTATA---ACAAACATATTCAGTGCTACAGATGCTAGATTACAAAC 69293 ||||| |||| | || | ||| |||| || ||||| | ||| || | ||||| || Sbjct 11544 TCAAAG-GTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACAC 11486 Query 69294 TGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGAT 69353 |||||||||| ||| ||| | | |||||||| || | ||||| |||||||| Sbjct 11485 AGCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGAT 11426 Query 69354 AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGG 69413 || |||| ||| ||||| |||||||| |||||||||| || ||||| | || | || Sbjct 11425 GGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGG 11366 Query 69414 AGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTAC 69473 ||| || || || ||||||| || || || | | ||| || | ||| || | ||| Sbjct 11365 AGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACTAC 11306 Query 69474 GGTCTTGTAACGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTCGAATTCATCTCCC 69531 | | | || || | || | || || | || || ||| || || || || ||| Sbjct 11305 C--CGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCC 11248 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 ||| ||||||| ||||| || ||| | || |||||||| ||||| | | | | Sbjct 11247 CAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTT 11188 Query 69592 TTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCT 69650 | || | ||||| || | ||| || ||||| || || ||| ||||| |||| | || Sbjct 11187 TCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGTGCCCT 11129 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | || || || || || ||||| || | || || || || | | ||| | ||||| Sbjct 11128 CTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCA 11069 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 ||| || || || || || | | | |||||||||||||| || || || || | ||| | Sbjct 11068 TGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAACG 11009 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 || ||||| ||||| || |||||||| || | || ||||| || |||||||||||||| Sbjct 11008 TGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCC 10949 Query 69831 AGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCAT 69890 | ||| || || ||| ||| | ||| |||| | || ||| || |||||||| Sbjct 10948 TGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGA 10889 Query 69891 TTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTAT 69950 ||| ||||| || ||||| |||| | ||||||||| || || || ||||| ||||| | Sbjct 10888 TTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCTT 10829 Query 69951 CATGTTAAGAAGAAAACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATG 70009 |||| || || || ||||| || | || | ||| | || || || || || | | Sbjct 10828 CATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGT-TGGTGCCTGCGTTGAACAGAG 10770 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | ||||| || ||||||||||| || ||||| ||||| ||||| || ||||| || | | Sbjct 10769 TGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCGT 10710 Query 70070 CTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTA 70129 | ||||| | || ||||| | || || | ||| | |||||| || || || || Sbjct 10709 CAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCAG 10650 Query 70130 CCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGT 70189 || ||| ||| ||||||| |||||| || || || |||||||| ||||| | | Sbjct 10649 CCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAGAAAT 10590 Query 70190 TGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTA- 70248 | || ||||| ||||| || || || ||| ||||||| || || | | |||| | Sbjct 10589 TATAAGAAAAATCTCTATCATAGATTATAGCAGAATTGAGGCGGTC--TTTGTTTGCAAG 10532 Query 70249 -ACTATATCCA-TAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTTT--AGGATT 70304 || ||||| | | | || ||||| || || || || | | ||| ||| || Sbjct 10531 GACAATATCTAGGGTCTCTTGG-GAGATCATGGGGGA--GTGGCGCTTGTTTAAAGGGTT 10475 Query 70305 AACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAA 70364 |||||||||||| | ||| ||||| |||||||| || | || || || || || || | Sbjct 10474 AACATAGTTGAACAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCTTTATGGAG 10415 Query 70365 ATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGT 70424 || || | || || | || || || | ||||| || || || | || || || Sbjct 10414 GTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATCGGGGTGCTTAGTGGTCAGTGT 10355 Query 70425 AGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCC 70484 || || || || ||||| | || || ||||| | ||| || ||||| | || || || Sbjct 10354 GGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGTGGTCACTCCACTGTACAGACC 10295 Query 70485 TTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACA 70544 ||| || || ||||| | |||| || || | || || | ||| || |||||||| Sbjct 10294 TTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCATAACA 10235 Query 70545 TAATTTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCT 70591 | ||| || ||||| || |||||||||||||| || ||||| Sbjct 10234 GAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGACGCGCTCCT 10188 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || || ||||| || || |||||| || |||| || || |||||||||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || || || ||| | || || | ||||| ||||| |||| ||| ||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | |||| |||||||||| ||| ||| | | |||||| | ||||||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq62746 Length=64918 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||| | || || |||||||||||||| | ||||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 62086 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | || |||||||| |||||||| ||||| || || ||||| |||||||| | Sbjct 62085 TCAGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACG 62026 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| ||| || || Sbjct 62025 CCACAATTCTTTCACC 62010 >seq89243 Length=32234 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || ||| ||||| |||||||||||| || || ||||||||||| || ||||| || Sbjct 16510 GAACCAGCATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAG 16569 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| | |||||||| || || ||||||| | ||||||| || || ||| ||| || Sbjct 16570 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCA 16629 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||||||| | | ||||| || || || || | ||||| || || || || |||||| Sbjct 16630 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGT 16689 Query 69127 CTATG 69131 || || Sbjct 16690 CTGTG 16694 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| ||||| |||||| ||| |||| || || |||||||| | Sbjct 15532 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATATGAATGT 15591 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || || ||| | || || | || || ||||| || | || | | Sbjct 15592 TCAGAGACTGGCTCTGGTCAATGTAGGCACCACGGTCAGCTGCCATCTTAAGGATCATTT 15651 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||||| ||| || | | ||| || | ||||||||||| Sbjct 15652 TCTGAGAGATTTCCCAAACAGTTTTGTAGAGCTGCTTTAGATCATCTGGAA 15702 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || |||| |||| | | | || || || || || | |||||| || |||||||||||| Sbjct 18104 CTGGACAGTTGAGGTTTATTGGTGCCAGCGTTGAACAGTGTAGGGGAGGCGTGAGTGAAC 18163 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 ||||| || || ||||| ||||| || ||||| |||| || ||||| | |||||| Sbjct 18164 CATTTCTCTGAGAGCAGGTTGTAGGTCTCAATGGCTGCGTCCATATCTTGTTTATGAATC 18223 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGG 70121 || | || || | ||| | ||||||||| || Sbjct 18224 CCAACAGCCACTCTCATGAGCATATGCTGCGG 18255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685568950040160