Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq77734 237 2e-57 seq89243 114 2e-20 seq62746 91.5 2e-13 >seq77734 Length=62899 Score = 237 bits (262), Expect = 2e-57 Identities = 943/1455 (65%), Gaps = 38/1455 (3%) Strand=Plus/Minus Query 110648 AGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGG 110707 ||||| |||| || || ||| || || |||||| || | |||| ||| | | Sbjct 12093 AGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTG 12034 Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 |||||||| | ||||| | ||| | | | |||||||||||||| |||||||| |||||| Sbjct 12033 TAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAG 11974 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || |||| ||| | ||||| | | ||| | | || ||| Sbjct 11973 GCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCC 11914 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTC--CCACATGTCAAACTGAA 110885 || || | | |||||| || || | | | |||||| ||||||||| |||| | Sbjct 11913 TTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGT--ACCTTCTCCCACATGTCGTACTGCA 11856 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || | | | |||||||| |||| ||||| | || | ||| || | Sbjct 11855 GAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTA 11796 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 | |||||||| | ||||| || || | || ||||| |||||||| | ||||| | Sbjct 11795 ACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCA 11736 Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065 || ||||||| ||||||| || || | ||| || |||| |||||||| | Sbjct 11735 GCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCT 11676 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGA 111124 | ||||| | |||||||| ||||| || | || || || ||| ||| ||| || Sbjct 11675 GCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCC-TCTGGAACTGGG 11617 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCA 111181 || | ||| ||||||||| ||| || ||| | ||||| |||| |||| | Sbjct 11616 TAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGACTGAG 11560 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 ||| |||| | ||||| || || ||| | | |||||| | || || || Sbjct 11559 GCAAGCTTTTTGAAGTCAAAGGTCCGT---TCTGGAGTTACATACATGTTGAGTGCAATA 11503 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| || || ||||| |||||| | ||| ||||| | ||| ||||| || Sbjct 11502 GAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCAC 11443 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 ||||| | || || || |||||||||| |||||||||||| |||| || ||||| Sbjct 11442 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 11383 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||||| | |||||| || || || ||||| ||||| || | | || || | ||| || Sbjct 11382 TTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACC 11323 Query 111422 T-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | | | | || | || | || | | |||||| |||||| ||||| || Sbjct 11322 TGCTGAGCCTTG-ACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTT 11264 Query 111481 TTCAAACTCCT-CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGA 111538 |||||||||| | |||| | | || || || || || | || || || | | | Sbjct 11263 CTCAAACTCCTCCCCCCAACAC-TCATCCAGCCCAGG-GCACTCACTGGGGCACATCAAA 11206 Query 111539 GACCATTGACCACCT--TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 111596 ||||| | || | | || |||| ||||||||| | || || ||||| |||| Sbjct 11205 GACCA--GTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCAT 11148 Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656 | ||||| |||| || ||| || | ||| ||| |||||||||||| | Sbjct 11147 AGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGT 11088 Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCC 111713 | | | || |||||||||||| || || | || | | ||| ||| | | Sbjct 11087 CAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGC 11028 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || |||| | || || || |||||| |||| | || | |||||||| | || |||| Sbjct 11027 CACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCAT 10968 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCACATCATGGATGTGC 111832 ||| | ||||||||| || ||| || | | | | ||| | || | ||| Sbjct 10967 TTGAATTACCATTTGTTCCTGCAAT-GTAGCTACCTGTTGATCT-AATGCAGCTAACTGC 10910 Query 111833 -ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGAT 111891 | ||||| || || || | |||||||| | ||||| | | || || |||| || Sbjct 10909 TACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAAT 10850 Query 111892 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TT 111949 || | || ||| ||||| |||| | |||||||| ||||| | ||| |||| || Sbjct 10849 GCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTT 10790 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTT 112008 |||| || || ||||| || || || | || ||| ||||| || | | |||| | Sbjct 10789 GGTG--CCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC-CACTTCTCAGACAGCAG 10733 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | | ||||| || |||||| || | || || | ||| Sbjct 10732 GTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCAT 10673 Query 112069 GAACATGTACTGTGG 112083 || ||| | ||||| Sbjct 10672 GAGCATATGTTGTGG 10658 >seq89243 Length=32234 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||| |||| ||| || || || | |||| || || || || Sbjct 17021 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCC 17080 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||||||| |||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 17081 TAAATTCTGCTGGTTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCC 17140 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| |||||||| | | ||| || | ||| Sbjct 17141 CGTCTCGGTCTGTGACTCAATAATGGCATACCA 17173 >seq62746 Length=64918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAG-AAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||| | ||||||||||| || ||| | || || ||||| ||||||| ||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGGCCAGGCATTAGACCCCTCTTT 62087 Query 122737 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| |||||||||||| ||| || || || |||||||| || ||||| ||| ||||| Sbjct 62086 TTCAGCCAATAAATAGCAGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 62028 Query 122796 CGC 122798 ||| Sbjct 62027 CGC 62025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626806992182400