Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq77734 114 2e-20 seq142225 96.9 4e-15 seq89243 95.1 1e-14 >seq77734 Length=62899 Score = 114 bits (126), Expect = 2e-20 Identities = 451/699 (65%), Gaps = 13/699 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | ||||||| |||||||| ||||| ||||||||| Sbjct 12033 TAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAG 11974 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC 118300 || || |||||||| |||| | | |||||| | | ||| | ||| ||| | || Sbjct 11973 GCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTA-TCTTCTC 11915 Query 118301 CTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 ||| || | |||||| || || | | || || |||||| || |||| || Sbjct 11914 CTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAG 11855 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 || || | | |||| || || | |||||||| || || || || || || Sbjct 11854 AATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAA 11795 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 || |||| | ||| | ||| || | || || || ||||| || | ||||| Sbjct 11794 CTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAG 11735 Query 118481 CTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACC 118537 || ||| || ||| | |||| | || ||| | ||| || |||| |||||||| Sbjct 11734 CTGGGCTTCA--GGACTTTCAAATG-GATAACGCATGAGAATGAAGGCATCTGCGAGACC 11678 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CGG 118596 || ||||| | ||||| || | || | | || || ||| || ||| | | | Sbjct 11677 CTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCC-TCTGGAACTG 11619 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || | || | || || | | | || || ||| | | || || |||| | Sbjct 11618 GGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGG 11559 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 |||||||| | | ||||| | || ||| | | |||||| | || || || | Sbjct 11558 CAAGCTTTTTGAAGTCAAAGGTCCGT---TCTGGAGTTACATACATGTTGAGTGCAATAG 11502 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||| |||||||||| |||||| | || ||||| | ||| || ||||||| Sbjct 11501 AAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCACA 11442 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 |||| | || ||||||||||| |||| || || ||| ||||||| ||||| | Sbjct 11441 AGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTT 11382 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 |||| | |||||| || || || ||||| || || |||| Sbjct 11381 TGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACT 11343 >seq142225 Length=5922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || || |||| Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||||||||| || || || |||||||||||||| ||||||||| ||||| | Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 130155 CAAAGAGACGCTC 130167 | | || ||||| Sbjct 3054 CCACGACGCGCTC 3042 >seq89243 Length=32234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| ||||||| | |||||||||| || | ||| ||||| |||||| Sbjct 16000 TAAATGTTGCTGGTGTAAGGCTCAATGGACTCATTGTTGCCAAGGATCTGGGCAGTGGAG 16059 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||| |||||||| Sbjct 16060 GCTGTGGGCATCGGGGCCAGGAGCAGGCTGTT 16091 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| || ||||| |||| ||| || ||||||| ||| || | | | |||||| Sbjct 17021 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATT--TGATGGTG 17078 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 || || |||| || || ||| |||| || ||||| ||||| ||||||||||| ||| Sbjct 17079 CCTAAATTCTGCTGGTTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTC 17138 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||||||| || || |||| | ||| || | ||| Sbjct 17139 CCCGTCTCGGTCTGTGACTCAATAATGGCATACCA 17173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617228911220640