Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq77734 237 2e-57 seq142225 96.9 4e-15 seq89243 82.4 9e-11 >seq77734 Length=62899 Score = 237 bits (262), Expect = 2e-57 Identities = 913/1405 (65%), Gaps = 48/1405 (3%) Strand=Plus/Plus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAA--GACCCCAAATGTCC 104371 ||||| ||| || | || || || ||||| || || |||||| ||||||| | ||| Sbjct 10750 GTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGG--CACCAACAGACCCCAGCTCTCC 10807 Query 104372 AGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACG 104431 || |||||||| | |||| ||||| ||| || | || || |||| || || | Sbjct 10808 AGCTGCTTCCTACTGGCCATGAAGGATGACAGCATTGAAGGCATTTATGACACACTCAAA 10867 Query 104432 GAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAG 104490 | ||||| | |||||||| | || || || ||||| | ||| | || | || Sbjct 10868 CAATGTGCACTCATCTCAAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGCATT-AG 10926 Query 104491 AGCCA-ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGC 104549 | | | | | || ||| || ||||||||| | ||| |||| || | ||||||| Sbjct 10927 ATCAACAGGTAGCTAC-ATTGCAGGAACAAATGGTAATTCAAATGGCCTTGTGCCAATGC 10985 Query 104550 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGAT 104606 | | || | |||| |||||| || || || | |||| ||| | ||| ||| Sbjct 10986 TGAGGGTGTATAACAACACAGCACGTTACGTGGACCAAGGTGGCAATAAACGACCGGGTG 11045 Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 | | || | || || |||||||||||| || | | || ||||||||||| Sbjct 11046 CCTTTGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGA 11105 Query 104667 TCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 ||| ||| | |||||| | || || || ||||||| || || ||||| || | Sbjct 11106 AAAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTG 11165 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC-AGACAAG 104785 || | ||||||||||| || || | | | |||||| | | || || || | Sbjct 11166 ATTTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAGTGAGT 11225 Query 104786 GCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 || ||||| || || || | ||| ||||||||||| || ||||| ||||| Sbjct 11226 GC-CCTGGGCTGGATGAGTGTTGGGGG-GAGGAGTTTGAGAAGCTGTACACGCGCTACGA 11283 Query 104845 GGAAGAAGGTCGGGC-GACTGCGACGGT--GCCA--GCTGCCGATGTGTGGAAAGCTATT 104899 | | || |||| || || |||| | || ||| | |||||| | || || Sbjct 11284 GCAGGA-----GGGCAGAGTGAAACGGGTAGTCAAGGCTCAGCAGGTGTGGTATGCCATC 11338 Query 104900 CTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAA 104959 | ||||||| || ||||| || || || |||||| | |||||||| ||||||||| Sbjct 11339 ATAGAGTCTCAGACAGAGACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACAGG 11398 Query 104960 AAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTG 105019 |||||||| || |||||||||| ||||| | || | || ||||| || || Sbjct 11399 AAGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTGCACAGAGATTGTG 11458 Query 105020 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 105079 || | |||| | |||||||| |||||||||||| | || || || || ||| || | Sbjct 11459 GAGTATACAAGCCAAGATGAGGTAGCTGTGTGTAACTTGGCTTCTATTGCACTCAACATG 11518 Query 105080 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAA---A 105136 ||||| |||||| | ||| ||||| | |||| || | ||| || || | Sbjct 11519 TATGTAACTCCAGA---ACGGACCTTTGACTTCAAAAAGCTTGCCTCAGTCACTAAAGTA 11575 Query 105137 ACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGC 105195 | ||| | |||||| |||| | ||||| | ||| | ||||| ||| ||| || Sbjct 11576 ATTGT---AAGAAACCTCAACAAGATCATTGACATAAACTACTACCCAGTTCCAGA-GGC 11631 Query 105196 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGT 105255 || || || | | ||| | || ||||| | ||||| ||||||||||| |||| Sbjct 11632 GGAGAACTCAAACAGACGCCACAGGCCTATTGGAATTGGTGTGCAGGGTCTCGCAGATGC 11691 Query 105256 ATTCATTCTTTGTCGCCACGCATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGC 105313 |||||||| || | |||||| | ||| ||||| || | ||| | Sbjct 11692 CTTCATTCTCATGCGTTATCCATTTGAAAGTCC--TGAAGCCCAGCTGCTGAATATCCAG 11749 Query 105314 ATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGAT 105373 || ||||||||||| || | || || | ||| | || | ||||| ||||| ||| Sbjct 11750 ATCTTTGAGACCATCTACTATGCTGCCTTGGAGTCAAGCTGTGAGTTAGCAGAAAAAGAT 11809 Query 105374 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATAT 105432 || || ||||| |||| |||||||||| | ||||| | || || | || || Sbjct 11810 GGGCCTTATGAGACCTACCCAGGTTCTCCAG-TGAGTAAGGGCATTCTGCAGTACGACAT 11868 Query 105433 GTGG--GAAGGTGAGACC-AAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAA 105489 |||| |||||| ||| | || | || |||||| || || ||||| || Sbjct 11869 GTGGGAGAAGGT---ACCGACTCTGCTCTGGGACTGGAAACTGCTTAAGGAGAAGATAGC 11925 Query 105490 GGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA 105549 | | ||| | | ||||| | | |||| || ||||| || |||||||| ||||| Sbjct 11926 TAAACATGGTATAAGGAACAGCTTGTTGTTGGCCCCCATGCCTACTGCCTCCACAGCACA 11985 Query 105550 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 105609 ||| |||||||||||||| | | | ||| ||||||| | |||||||| | ||| Sbjct 11986 AATATTGGGTAATAATGAGTCCATCGAAGCCTACACTAGCAACATCTACACACGCAGAGT 12045 Query 105610 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 105669 |||| | ||||||||| ||| || ||| ||||| | | ||||| | || || Sbjct 12046 CCTCTCCGGAGAGTTTCAGATCGTAAACCCACATCTGCTCAAGGACCTGACTGAACGGGG 12105 Query 105670 TCTCTGGTCCAAGGATATGAAGGAT 105694 || ||| | |||| |||||| || Sbjct 12106 GCTGTGGAACGAGGAAATGAAGAAT 12130 >seq142225 Length=5922 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| ||||| |||||||||||||| |||||| ||| Sbjct 3042 GAGCGCGTCGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCC 3101 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| ||||| ||||| || ||||| || || ||||||||||||||| ||| Sbjct 3102 ATTTTCTGGCTGAAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATC 3161 Query 94924 TCTCGTGACGAGGGAC 94939 | ||||||| || Sbjct 3162 AGCAGAGACGAGGTAC 3177 >seq89243 Length=32234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||| | |||| || |||||||| || || ||||||||||| ||||||| Sbjct 17175 TGTGGTATGCCATTATTGAGTCACAGACCGAGACGGGGACCCCATACATGCTCTACAAAG 17116 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 | || || ||| |||||||| || ||||||| || ||||| ||| || | Sbjct 17115 ATGCATGCAACAGGAAGAGTAACCAGCAGAATTTAGGCACCATCAAATCCAGCAACCTGT 17056 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | || || || | |||| ||| |||||||||| Sbjct 17055 GCACTGAGATTGTAGAATACACAAGCAAAGATGAG 17021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582123120646560