Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq77734 170 2e-37 seq142225 98.7 1e-15 seq89243 82.4 8e-11 >seq77734 Length=62899 Score = 170 bits (188), Expect = 2e-37 Identities = 515/787 (65%), Gaps = 10/787 (1%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||| ||||| || ||| || |||| | | ||| | || ||||||||| Sbjct 11502 GAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCAC 11443 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || ||| | ||||||||||| | |||| |||||| |||||| ||||||||| || Sbjct 11442 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 11383 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| ||||||| || || || ||||| |||| || | | | | | ||| | Sbjct 11382 TTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACC 11323 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCT-GTGCGACGTACGTCCGGTACAACTC 79295 | | | ||| ||| ||| || | |||| ||| |||| | ||||| || Sbjct 11322 TGCTGAGCCTTGACTACCCGTTTCACTCTGCCCTCCTGC-TCGTAGCGCGTGTACAGCTT 11264 Query 79296 GTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | || ||||||| | ||| || ||| || |||||||| |||||||||| Sbjct 11263 CTCAAACTCCTCCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAG 11205 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||||| || || || ||| ||| |||||| | || |||||||| ||||| || Sbjct 11204 ACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGA 11145 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 ||||||| || | | |||||| | || ||| | ||| || ||||| | Sbjct 11144 AGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAA 11085 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 | ||| |||||| |||||||| || ||||| || | |||| || || ||| | Sbjct 11084 ACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCAC 11025 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 | |||| ||||| || || |||||||| | || | ||||| ||||| | ||| | | Sbjct 11024 CTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTG 10965 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGC--AGTG-GA 79651 || || || || || |||| | | | |||| ||| | || | Sbjct 10964 AATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATG---CAGCTAACTGCTA 10908 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 || || || || | | || |||||| | || || | ||||| || || || |||| Sbjct 10907 CACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGC 10848 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCG 79771 | || || ||| |||||||| || | ||||||||||| || | ||| || |||| | Sbjct 10847 CTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGG 10788 Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGT 79831 | || |||||||| || || || | || || ||||| |||| | || ||| | || Sbjct 10787 TGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGT 10728 Query 79832 ACGTCTC 79838 | ||||| Sbjct 10727 AGGTCTC 10721 Score = 138 bits (152), Expect = 1e-27 Identities = 343/518 (66%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| || || | || || || |||||| Sbjct 10721 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAC 10780 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| | || ||||| |||||| |||| ||||||||||||||| Sbjct 10781 GCAGGCACCAACAGACCCCAGCTCTCCAGCTGCTTCCTACTGGCCATGAAGGATGACAGC 10840 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| ||||| || || || ||||| | || || | |||||| || | | || || Sbjct 10841 ATTGAAGGCATTTATGACACACTCAAACAATGTGCACTCATCTCAAAATCTGCAGGAGGG 10900 Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || || | || | ||| | || | || | |||| || || || || Sbjct 10901 ATTGGTGTAGCAGTTAGCTGCATTA---GATCAACAGGTAGCTACATTGCAGGAACAAAT 10957 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | | || | || |||||||| | || | |||||||| || | ||||| Sbjct 10958 GGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTATAACAACACAGCACGTTACGTG 11017 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || ||| ||||| ||| | || ||||| ||||| |||||||||||| Sbjct 11018 GACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATGTACCTGGAGCCATGGCACTTT 11077 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 ||||| | || ||||| || | ||| ||| | |||||| | | || Sbjct 11078 GACGTGTTTGACTTCCTTGAGTTAAAGAAAAACACTGGTAAAGAGGAGCAGAGGGCACGA 11137 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||||||||| ||| | ||||| || || | |||||| ||| ||| || || || | Sbjct 11138 GACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAG 11197 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || ||| |||||||||| || |||||||| || Sbjct 11198 GACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCT 11235 >seq142225 Length=5922 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| || ||| || ||||||||||| || || || ||| Sbjct 3066 GTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTGAAGAAACGAGGC 3125 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || |||| |||||||||||||| || | | ||||||| Sbjct 3126 CTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 3174 >seq89243 Length=32234 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || |||||||| |||| |||||||||||||| ||||||||||| ||||| || || ||| Sbjct 18029 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGTATTGAGGGCATTTACGACACCCTGAAG 17970 Query 19313 GAGTGCGCGCACATCTCCAA 19332 |||| || | |||||| || Sbjct 17969 CAGTGTGCTCTCATCTCTAA 17950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547454874951360