Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq77734 131 2e-25 seq93791 95.1 1e-14 seq88075 84.2 2e-11 seq62746 84.2 2e-11 >seq77734 Length=62899 Score = 131 bits (144), Expect = 2e-25 Identities = 460/708 (65%), Gaps = 14/708 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || || ||| | || || ||||||||||| || || || || ||| | Sbjct 10745 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACCAACAGACCCCAGCTC 10804 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||||||| |||| |||||||||||| || || ||||| || || || ||| Sbjct 10805 TCCAGCTGCTTCCTACTGGCCATGAAGGATGACAGCATTGAAGGCATTTATGACACACTC 10864 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443 || | ||||| | |||||| || | | || || || ||| | || | ||| | Sbjct 10865 AAACAATGTGCACTCATCTCAAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCT---GC 10921 Query 53444 GTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 | | | | || | | || | | || || || || | |||| | ||||| Sbjct 10922 ATTAGATCAACAGGTAGCTACATTGCA-GGAACAAATGGTAATTCAAATGGCCTTGTGCC 10980 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | || | |||||||| || || ||||| |||| ||||| || || Sbjct 10981 AATGCTGAGGGTGTATAACAACACAGCACGTTACGTGGACCAAGGTGGCAATAAACGACC 11040 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| | || ||||| ||||| ||||| |||||| ||| | | || || || ||| | Sbjct 11041 GGGTGCCTTTGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTT 11100 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682 || ||| | || ||| | | || ||||| || || || ||||| Sbjct 11101 AAAGAAAAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGAT 11160 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || || | |||||| | | |||||| || || |||| |||| |||||||||| | Sbjct 11161 CCCTGATTTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAG 11220 Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGT 53801 |||||||| || || | | |||| | || ||||||||| | || |||| | | Sbjct 11221 TGAGTGCCCTGGGCTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTACACGCGCT 11279 Query 53802 AC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 || |||| ||||| | || | |||||||| | |||| ||| |||| || Sbjct 11280 ACGAGCAG--GAGGGCAGAGTGAAACGGGTAGTCAAGGCTCAGCAGGTGTGGTATGCCAT 11337 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 | | || ||| ||||| ||||| || ||||||| ||||| ||| | ||| Sbjct 11338 CATAGAGTCTCAGACAGAGACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACAG 11397 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||||| |||||| |||| | ||| |||||||| || ||||| || Sbjct 11398 GAAGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTG 11445 >seq93791 Length=36465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || || ||||| Sbjct 4019 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCGAACTGA 4078 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | |||||| ||||||||| ||||||||||| ||||| Sbjct 4079 CCCAGA-GGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCAC 4137 Query 152148 AATCGT 152153 ||| || Sbjct 4138 AATGGT 4143 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| | || |||||||| || Sbjct 4019 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCGAACTGA 4078 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| | |||||| |||||| ||||| ||||||||||| ||| Sbjct 4079 CCCAGAGGCTGCAGGATGTTTATGTTGTTACTGCCCACGAAGTTCTGAGCCAAGTTCACA 4138 Query 117425 ATCGT 117429 || || Sbjct 4139 ATGGT 4143 >seq88075 Length=73753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| ||||| || |||| ||| |||| |||||||||||| || || ||||| || || Sbjct 4985 AGTAAAAATATATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCGAGTACCAAACTG 4926 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| |||| ||| || |||| ||||||| ||| ||||| || |||||||| Sbjct 4925 ACCAAGAGGCTGCAAAAGATTCAAGTTGTTGCTGCCAACAAAATTCTGAGCCAA 4872 >seq62746 Length=64918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||| | | |||||||||||| || || | ||| ||| Sbjct 62143 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTTTC 62084 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| | || ||| ||||| ||| |||||| || || || ||| ||||| || Sbjct 62083 AGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACGCC 62024 Query 74892 ACAA 74895 |||| Sbjct 62023 ACAA 62020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546148627831200