Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq130048 172 6e-38 seq56035 86.0 7e-12 seq142225 82.4 9e-11 seq93791 82.4 9e-11 >seq130048 Length=4274 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||||| ||||| ||| | | Sbjct 2375 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 2316 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || ||||||||||| || ||||||||||| ||| Sbjct 2315 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 2256 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || || | || ||||| | ||||| || Sbjct 2255 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2196 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || |||||||| || ||||| ||| ||||||| | ||||| || Sbjct 2195 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCCA 2146 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||| || || || || |||||||||||| | || Sbjct 2603 ATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCCAGT 2544 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || || || ||||||||||| ||||| ||||| ||| Sbjct 2543 GACACTATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 2484 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || ||||||| || || || | ||||| || Sbjct 2483 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTACAAC 2424 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || ||||| ||||| |||| || | ||||| Sbjct 2423 ATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2377 >seq56035 Length=4107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || ||||| || || || |||||||||||| | | Sbjct 3997 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAAACCATCACCCTTGAGGTTGAGCCCAGC 4056 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || | |||| |||| | || ||||| || || ||||||||||| ||||| Sbjct 4057 GACACGATTGAAAATGTTAAAGCTAAGATCCAAGACAAGGAGGGCATTCC 4106 >seq142225 Length=5922 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 |||||| ||||| ||||| ||||| || ||| | ||||||||||| || || || || Sbjct 3065 TGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTGAAGAAACGAGG 3124 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||| || ||| | || || |||||||| ||| | ||||||| Sbjct 3125 CCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 3174 >seq93791 Length=36465 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | ||||||||||| || || || ||| | ||| | || |||| Sbjct 4143 ACCATTGTGAACTTGGCTCAGAACTTCGTGGGCAGTAACAACATAAACATCCTGCAGCC- 4085 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| ||||| || || || || || ||||| |||||||| ||| |||||||||| Sbjct 4084 TCTGGGTCAGTTCGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 4025 Query 32244 CTTCACC 32250 ||||||| Sbjct 4024 CTTCACC 4018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569197981049280