Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq130048 96.9 2e-15 >seq130048 Length=4274 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | |||||| ||| || || || ||||| || || || Sbjct 2148 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 2207 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||||||||| || || |||||||| || | | ||| || || || || Sbjct 2208 GAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 2267 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| || | | ||| ||||| | |||||| Sbjct 2268 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCAC 2327 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | ||||||||||| |||||||| Sbjct 2328 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| || || || || || || || || ||||| || || || Sbjct 2377 CCACCTCTGAGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAG 2436 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| ||||| |||||||| || | | ||| || || || || Sbjct 2437 AGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2496 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | ||| ||||| | ||| || Sbjct 2497 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAAC 2555 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || ||||||||||| | || || ||||| || ||||||||| Sbjct 2556 CTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATGTTG 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314131051574252