Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq40516 183 4e-41 seq38795 179 5e-40 seq40193 116 5e-21 seq15326 104 3e-17 seq7799 96.9 4e-15 >seq40516 Length=456 Score = 183 bits (202), Expect = 4e-41 Identities = 200/266 (75%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566 || |||||||||| | || || || ||||||||||||||||| | || |||||||| | Sbjct 291 TAACAATAGGACCCGGAGACTTCTTGGTTCATCATGCTATTGCTTTAGGTTTACATACAA 232 Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATA 186626 | || | ||| |||| || || || |||||||| | ||||| || | || ||||||| Sbjct 231 CTACACTGATCTTAGTAAAAGGGGCTTTAGATGCACGTGGTTCCAAGTTAATGCCAGATA 172 Query 186627 AGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATA 186686 | || ||||| || ||| || ||||| || ||||| || |||||||||||||||||| Sbjct 171 AAAAGGATTTTGGTTATAGTTTTCCTTGCGACGGTCCGGGACGAGGTGGTACTTGTGATA 112 Query 186687 GTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGG 186746 ||| | |||||| || || ||| | | || |||||| || ||||| || | ||||| Sbjct 111 TTTCGGCTTGGGACGCATTTTATTTGGCGGTTTTCTGGATGTTAAATACCATTGGATGGG 52 Query 186747 CAGATTTTTATTGGCACTGGAAGAAC 186772 |||||||||||| |||||| || Sbjct 51 TGACTTTTTATTGGCATTGGAAGCAC 26 >seq38795 Length=425 Score = 179 bits (198), Expect = 5e-40 Identities = 189/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || || || |||||||| || || ||||| || |||||||| || Sbjct 327 AATGTCACATTCAGTAAAGATTTATGATACGTGTATAGGATGTACTCAATGTGTCCGAGC 268 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 || || |||||||||||||||| | |||||||| ||||| ||||| |||||||| || Sbjct 267 CTGCCCCACGGATGTATTAGAAATGATACCTTGGGACGGGTGTAAAGCTAAGCAAATCGC 208 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| ||||| ||||| || ||||| ||||||||| | || ||||| || Sbjct 207 TTCTGCTCCAAGAACAGAGGACTGTGTCGGTTGTAAAAGATGTGAATCCGCCTGTCCAAC 148 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723 || || || ||| |||| ||||| || | ||| ||||| || |||| ||||| |||| Sbjct 147 GGATTTCTTGAGTGTTCGAGTTTATTTATG-GCATGAAACAACTCGAAGTATGGGGCTAG 89 Query 182724 CATATT 182729 | |||| Sbjct 88 CTTATT 83 >seq40193 Length=450 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 184070 GATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGT 184129 ||||||||||| || | ||||||||||| || |||||||| ||||| ||||||||| Sbjct 21 GATGCAATCATATCACATCTCAACTGGGTATGTATATTTTTAGGCTTTCACAGTTTTGGT 80 Query 184130 CTTTATATTCACAATGATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGAT 184189 | |||||||| ||||||| |||||| || || || | || | ||| | || ||| Sbjct 81 TTGTATATTCATAATGATACTATGAGCGCTTTAGGGCGTCCCCAAGATATGTTTTCAGAT 140 Query 184190 ACAGCAATACAATTACAACCTGTATTTGCACA 184221 || || |||||||||||||| || ||||| || Sbjct 141 ACTGCTATACAATTACAACCCGTCTTTGCTCA 172 >seq15326 Length=244 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 185891 GAAGCACATACACCACCAAGAGGAGGACTAGGTGCAGGTCATAAAGGATTATATGAAACA 185950 |||||||||| || || | || || | || || ||||| || | ||||| ||| Sbjct 3 GAAGCACATATTCCTCCGGGGGGGCGATTGGGGCGTGGACATAAGGGTCTTTATGACACA 62 Query 185951 GTTACAGACTCATTACACCTACAGTTAGGTCTTGCACTTGCATCTCTAGGTGTTGTTACT 186010 | | | || | || | || ||||| ||||| || || ||| |||| ||| |||| Sbjct 63 ATAAATAATTCGATTCATTTTCAATTAGGCCTTGCTCTAGCCTCTTTAGGGGTTATTACC 122 Query 186011 AGTCTGGTGGCACAACATATGTACTCAATGCCATCCTATGCTTTCATAGCACAGGCGCAT 186070 |||| || ||||| |||||||| | || | ||||| ||||||||||| | | Sbjct 123 TCCTTGGTCGCTCAACACATGTACTCTTTACCCGCTTATGCGTTCATAGCACAAGACTTT 182 Query 186071 ACTACGCAAGCTGCTCTATATGTTCATCATCAATACATTGCA 186112 ||||| ||||||||| ||||| |||||| |||||||| ||| Sbjct 183 ACTACTCAAGCTGCTTTATATACTCATCACCAATACATCGCA 224 >seq7799 Length=219 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 185645 CCATTCTTTACAGGAAACTGGGGTGTTTATGCACAAAATCCTGATGGATTAAATCAAATA 185704 ||| | |||||||| | ||| | ||||||| ||||| || ||| | | ||| || Sbjct 11 CCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCAAGTAGTCATTTA 70 Query 185705 TTCAATACAACAGAGGGTTCTGGAACAGCAATATTAACATTCATGGGTGGTTTCCATCCA 185764 || ||| | | || | ||||| || || |||| | | || || ||||||||| Sbjct 71 TTTGGTACCTCCCAAGGGGCCGGAACTGCCATTCTAACCCTTCTCGGAGGATTCCATCCA 130 Query 185765 CAAACAGAGGCATTATGGTTGACTGATATAGCACATCATCACCTTGCAATAGGAGTAATA 185824 ||||| | |||||| |||||||||| || |||||||| | || || | | | || Sbjct 131 CAAACGCAAAGTTTATGGCTGACTGATATTGCTCATCATCATTTAGCTATTGCATTTATT 190 Query 185825 TTCATTATTGCAGGTCATATGTATAGAA 185852 || ||||||| |||||||||||||||| Sbjct 191 TTTCTTATTGCTGGTCATATGTATAGAA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630195569675040