Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq89222 109 5e-19 >seq89222 Length=38626 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| |||||||||||||||||||| || || ||||| || || | ||| |||||||| Sbjct 34839 TACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCT 34898 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | ||||| | ||||||||| ||||| ||||| || | || ||||| |||||| Sbjct 34899 CGGTCAGTAAACCCACCCTTGTCCAGGAAGTCACGAGAACCATTGGCATCCCAAATCTTC 34958 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 34959 ACTCCTTTTGCAGAGAGCTCTTTGG 34983 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| || | || ||||| ||||| | Sbjct 34983 CCAAAGAGCTCTCTGCAAAAGGAGTGAAGATTTGGGATGCCAATGGTTCTCGTGACTTCC 34924 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||||| | ||||| | || |||||||| ||| | || || ||||| || || | Sbjct 34923 TGGACAAGGGTGGGTTTACTGACCGAGAGGAGGGAGACCTTGGGCCTGTCTATGGCTTTC 34864 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||||||||||||||| ||||| Sbjct 34863 AGTGGAGACACTTTGGGGCAGAGTA 34839 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||| || || || || || || || ||||| ||||| || || || | ||| Sbjct 34382 TGGGCGATCATATATGTTAGAAGTGCATAGCTGGCAATATTGAAAGGTACTCCCAGACCC 34441 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG-ACGTAGAATTG 6738 ||||| || || || ||||| |||||||| |||||||| |||| ||| || ||||| || Sbjct 34442 ATGTCACCAGAGCGCTGATAAAGCTGGCAAGACAGCTCACCAT-CGCACACATAGAACTG 34500 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGG 6774 || || | ||||||||||| || ||||| || || Sbjct 34501 ACAAAGAGCATGGCACGGGGGCAGAGCCATAAGCGG 34536 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 34571 CCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-CGCGAATGGGGA 34629 || || ||||| || ||||||||||| | || || || ||||| || ||| |||| || Sbjct 34536 CCGCTTATGGCTCTGCCCCCGTGCCATGCTCTTTGTCAGTTCTATGTGTGCG-ATGGTGA 34478 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||||| |||||||| ||||| || || || |||||||| | || || || ||||| || Sbjct 34477 GCTGTCTTGCCAGCTTTATCAGCGCTCTGGTGACATGGGTCTGGGAGTACCTTTCAATAT 34418 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| || || || || || || || |||||||| || Sbjct 34417 TGCCAGCTATGCACTTCTAACATATATGATCGCCCA 34382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447388041775680