Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq130048 167 5e-36 seq116751 89.7 1e-12 seq94371 86.0 1e-11 >seq130048 Length=4274 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 2164 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 2223 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || ||||||| |||||||||||| Sbjct 2224 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 2283 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| ||||| |||||||| | || ||||| |||||||| ||| Sbjct 2284 TGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 2343 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 2344 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || || ||||| |||||||| || || | || || | ||||| Sbjct 2392 AGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCC 2451 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| || ||||| || | || || || || |||| || |||||||| Sbjct 2452 TCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 2511 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||||| || |||||| | |||||||| || ||||| || Sbjct 2512 TGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTT 2571 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | ||||| || Sbjct 2572 TTACCGGTGAGGGTCTTGACAAAGATTTGCATGTT 2606 >seq116751 Length=26904 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||| || |||| | || ||| ||||||||| |||||| Sbjct 7792 GGTAGAGGAGGACAGTCTGCTCTTCGGTTTGCTCGTCTGAGAATGGAAAAGAGACACAAC 7851 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAAT---ACAGTGTTTTATCAAAGACAACAAGTGT 139938 || |||||||||| || || | ||| | || | | || ||| |||| |||| | Sbjct 7852 TATGTGAGAAAAGTGGCTGAAACAGCAGTGCAACTCTTTGTTTCCAATGACA--AAGT-T 7908 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 |||| | || || ||| |||| || || || || ||||| || ||||| | ||| Sbjct 7909 AATGTTGCAGGAATGGTTCTGGCTGGATCTGCTGATTTCAAAACTGAGCTCAGCCAGTCT 7968 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 7969 GACATGTTTGATCC 7982 >seq94371 Length=7202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||| || ||||||||||| | || |||||| Sbjct 5156 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 5215 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||||||||| || || || | |||||| || Sbjct 5216 AGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAGATCTGCATGTT 5262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156834491468060