Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq130048 136 9e-27 seq47915 134 3e-26 seq60969 84.2 5e-11 >seq130048 Length=4274 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| |||| | || | || || Sbjct 2163 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 2222 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || || || ||||| ||||||||||| Sbjct 2223 TTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 2282 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||| |||||||| || ||||| || | ||||| || Sbjct 2283 CTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGT 2342 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || || | ||||| Sbjct 2343 CTTCCCAGTGAGGGTTTT 2360 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| || || |||||||| |||| ||||| |||| | ||| | ||||| Sbjct 2391 CAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATC 2450 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||| || || || ||||| || | || || || || ||||| || |||||||| Sbjct 2451 CTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTC 2510 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| |||||| ||| || ||||| || || || || | ||||| || Sbjct 2511 TTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 2570 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || | || || | || | |||||| || Sbjct 2571 TTTACCGGTGAGGGTCTTGACAAAGATTTGCATGTT 2606 >seq47915 Length=828 Score = 134 bits (148), Expect = 3e-26 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 ||||||| || ||| |||| || ||||||||||| || ||||||||| | || || || | Sbjct 482 TTTACAATGTAATTGTTACAGCTCATGCCTTTGTAATAATTTTCTTTATAGTAATACCTG 423 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 | ||||| || || |||||||||||| | || || |||||||||| || ||||| |||| Sbjct 422 TCATGATTGGAGGGTTCGGAAATTGACTTGTACCCCTAATGATTGGAGCCCCTGACATGG 363 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 | || || | | ||||| ||||| |||||| | ||||| || || || Sbjct 362 CCTTCCCCCGAATAAACAACATAAGCTTTTGACTCCTACCTCCCTCTTT 314 >seq60969 Length=25283 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || ||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct 8435 TGTCCATCAGTGATGGAGATGACATTAGTAGGAATATAAGCAGACACATCACCGGCCTGG 8494 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 || || | ||||| | ||| || || || || || ||||| || Sbjct 8495 GTCTCAATCACAGGGAGGGCAGTGAGGGAGCCGCCGCCAAAGTT 8538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190146955974536