Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq89222 118 9e-22 >seq89222 Length=38626 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 29710 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29769 || ||| || |||| ||| || ||||| || || || || | |||||||| || || || Sbjct 34366 TTTTAGTCCTGTGATGTGGGCGATCATATATGTTAGAAGTGCATAGCTGGCAATATTGAA 34425 Query 29770 GGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTC 29829 || || || || |||||||| || || | ||| || |||||||| || ||||| || || Sbjct 34426 AGGTACTCCCAGACCCATGTCACCAGAGCGCTGATAAAGCTGGCAAGACAGCTCACCATC 34485 Query 29830 GCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || ||| || |||||||| | ||||||||||| || || ||||| || Sbjct 34486 GCACACATAGAACTGACAAAGAGCATGGCACGGGGGCAGAGCCATAAG 34533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || |||||||| || || || || || || ||||||||||| || | || || Sbjct 34851 AAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCTCGGTCAGTAAAC 34910 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | |||||||| ||||| | ||||| ||||| ||||| ||||| || || || | Sbjct 34911 CCACCCTTGTCCAGGAAGTCACGAGAACCATTGGCATCCCAAATCTTCACTCCTTTTGCA 34970 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| || || || || Sbjct 34971 GAGAGCTCTTTGGCATTGGTAGATCC 34996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405390764410984