Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq77734 616 2e-171 seq89243 114 2e-20 >seq77734 Length=62899 Score = 616 bits (682), Expect = 2e-171 Identities = 1322/1964 (67%), Gaps = 25/1964 (1%) Strand=Plus/Minus Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 ||||||| || || || ||||||| || || || | | | || ||||| || | Sbjct 12131 TATTCTTCATTTCCTCGTTCCACAGCCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 12072 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || ||||| ||||| || | ||||| || ||||| || || || || || | || Sbjct 12071 TTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTAGTGTAGGCTT 12012 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | || ||||| || ||||| ||||| || || || ||||| ||||| || |||| || Sbjct 12011 CGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATGGGGGCCAACA 11952 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | || || || || | ||||||| | || || || || || |||||| ||||| | Sbjct 11951 ACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTCCAGTCCCAGA 11892 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 | | ||||| ||||| | ||||| || ||||| || ||||| | || | Sbjct 11891 GCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTACTCACTGGAGAAC 11832 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | || || |||||||| || ||| |||| |||| ||||| || | ||||| || Sbjct 11831 CTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTTGACTCCAAGGCAG 11772 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 | || || || || || || |||| |||| || || |||||| ||| ||||| | Sbjct 11771 CATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGACTTTCAAATG 11712 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 ||||| | | ||||| ||||||||||| | ||||| || ||||| |||||||| || | Sbjct 11711 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCAATAGGCCTGT 11652 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | || || | | || ||||||| || || || || ||||| || || || | Sbjct 11651 GGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATGTCAATGATCTTGT 11592 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 |||| ||||| |||| ||||||| || || || || ||||| | | | Sbjct 11591 TGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAGTCAAAGGTCCGTT 11532 Query 77659 CTATA---ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 || | ||| ||||||| | || ||||| || | ||||| || |||||||||| Sbjct 11531 CTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACAGCTACCTCATCTT 11472 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | | | ||| | | ||||| || || | ||||| |||||||| ||||||| ||| | Sbjct 11471 GGCTTGTATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCT 11412 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | ||||| ||||| | || || | || || || | || | ||||| || || || Sbjct 11411 GCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTG 11352 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || || || || | | ||| || || || ||| || | | ||| || Sbjct 11351 TCTGAGACTCTATGATGGCATACCACAC--CTGCTGAGCCTTGACTACCCGTTTCACTCT 11294 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 | ||| || || | || || ||| ||||| || || |||||| ||||||| Sbjct 11293 GCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAG 11234 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 |||||||| ||| | ||||||||||| |||||||| | | | || | ||||| Sbjct 11233 CCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCAT 11174 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || | |||||| |||||||| ||| || || ||||| | || || || || || || Sbjct 11173 GAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACC 11114 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || || || || | || || || || | | ||| | |||||||| || || || || Sbjct 11113 AGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACAT 11054 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || ||||||||||| || || || || | || | || ||||| ||||| Sbjct 11053 GGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATA 10994 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 || |||| |||||| | || || || || | ||||||||||| | ||| || || || Sbjct 10993 CACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACC 10934 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 ||| | ||| |||| | || || || |||||||| || || || || || Sbjct 10933 TGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGC 10874 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || |||| | ||| || || || || || || ||||||||| ||||| || || || Sbjct 10873 ACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAA 10814 Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||||| || | || || || || ||||| || || | || ||||| |||| Sbjct 10813 GCAGCTGGAGAGCTGGGGTCTGTTG----GTGCCTGCGTTGAACAGAGTGGGAGAGGCAT 10758 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | || ||||| || ||||| || || ||||| || ||||| || | || || || || Sbjct 10757 GAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTT 10698 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 || ||||| || ||||| | ||| | |||||| || || | ||| || || || Sbjct 10697 TGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCAGCCACTTTTCCAT 10638 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | ||||||| || ||| || || | |||||||| ||||| | || || ||||| | Sbjct 10637 TGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAGAAATTATAAGAAAAAT 10578 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTA--ACAATATCCA- 78666 |||| || || || ||| ||||||| || |||||| |||| | |||||||| | Sbjct 10577 CTCTATCATAGATTATAGCAGAATTGAGGCGGTCTTTG--TTTGCAAGGACAATATCTAG 10520 Query 78667 TGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT--AGGATTAACATAGTTAAA 78724 | | | | || || || || || || | | ||| ||| ||||||||||| || Sbjct 10519 GGTCTCTTG-GGAGATCATGGGGGA--GTGGCGCTTGTTTAAAGGGTTAACATAGTTGAA 10463 Query 78725 TAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGC 78784 | ||| ||||| |||||||| || | || || || || || || || || || ||||| Sbjct 10462 CAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGACACAGC 10403 Query 78785 TATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 78844 || | |||||| || | |||||||| || || | || || ||||| || || || Sbjct 10402 AATGCGTGCAGCCAGGAGGGCATAATCGGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTC 10343 Query 78845 TGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 ||| || | | || || || | ||| || || ||| | || || ||||| || || || Sbjct 10342 TGCAGCGAGTGTGTCCAATTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCACCTT 10283 Query 78905 CATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAAT 78964 ||| | ||||| | || || |||||||| | ||| | |||||||| | ||| || Sbjct 10282 CATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCATAACAGAGCTTTTGGAT 10223 Query 78965 ACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||||| |||||||||||||| || || ||||| || ||||| Sbjct 10222 TCGAGAGGTGATTTTATCAAACATGACGCGCTCCTGGCGTCCAT 10179 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || || || |||||||| ||||||||| || | || || || |||||||||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||| | || || | || || ||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | |||| |||||||||| |||||| | | ||||| | ||||||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq89243 Length=32234 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || ||| || || ||| ||||| |||||||||||| ||| |||||||||| Sbjct 16494 TCCTTTGCTAACAGGAGAACCAGCATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTC 16553 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 | || || ||||| || | |||||||| || || ||||||| | ||||||| || Sbjct 16554 AGTGCTGGCCTCCAAGGCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTG 16613 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 || || ||| ||||| |||||| | | ||||| ||||| || || | ||||| || Sbjct 16614 GGCCTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGAC 16673 Query 77519 TCCAATACCAATAGGTCTATG 77539 || || ||||||||||| || Sbjct 16674 ACCGATCCCAATAGGTCTGTG 16694 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 15532 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATATGAATGT 15591 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || || || ||| | || || | ||||| ||||| || | || | | Sbjct 15592 TCAGAGACTGGCTCTGGTCAATGTAGGCACCACGGTCAGCTGCCATCTTAAGGATCATTT 15651 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT 77022 | |||| |||||||||| ||||||| | | || || | ||||||||||| || Sbjct 15652 TCTGAGAGATTTCCCAAACAGTTTTGTAGAGCTGCTTTAGATCATCTGGAATGT 15705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693313813772160