Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq77734 623 1e-173 seq89243 111 2e-19 seq62746 107 3e-18 >seq77734 Length=62899 Score = 623 bits (690), Expect = 1e-173 Identities = 1302/1921 (68%), Gaps = 33/1921 (2%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || ||||| || || || || ||||| ||||| || | ||||| || ||||| || || Sbjct 12084 AGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTG 12025 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || || | ||| | || ||||| || ||||| ||||| || || || ||||| ||| Sbjct 12024 CTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGC 11965 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || || |||| ||| || || || || | ||||||| | || || || || || | Sbjct 11964 ATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGT 11905 Query 75881 TTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTG 75940 ||||| ||||| || | ||||| ||||| | ||||| || ||||| || || Sbjct 11904 TTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTA 11845 Query 75941 CTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC 76000 || | || || || || || |||| ||| || ||||| |||| || || || Sbjct 11844 CTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTT 11785 Query 76001 GCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCA 76060 | ||| || ||| | || || || || || || |||| |||| || || |||||| Sbjct 11784 GACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCA 11725 Query 76061 AGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATA 76120 |||| ||||| |||||| | | ||||| || |||||||| || ||||| || ||||| Sbjct 11724 GGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATT 11665 Query 76121 CCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATA 76180 |||||||| || || | | || || | || || ||||||| ||||| || || || Sbjct 11664 CCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATG 11605 Query 76181 TCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 76240 || || || || ||||| ||||| |||| ||||||| || || || || Sbjct 11604 TCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAG 11545 Query 76241 TCAAATTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 ||||| | | ||| | ||| |||| || || || ||||| || | ||||| || Sbjct 11544 TCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACA 11485 Query 76298 GCTACCTCAT-TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGAT 76356 |||||||||| | | ||| ||| | | ||||| ||||| | ||||| || ||||| Sbjct 11484 GCTACCTCATCTTGGCTTGT-ATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGAT 11426 Query 76357 AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGG 76416 || || | ||| || ||||| ||||| ||||||| | || || || | | | || Sbjct 11425 GGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGG 11366 Query 76417 AGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATT 76474 |||||| || || |||| || || || || | | ||| || || || ||| || | | Sbjct 11365 AGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACAC--CTGCTGAGCCTTGACT 11308 Query 76475 ATAGATTTGTATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTC 76532 | ||| || | | ||| | || || | || || | | ||||| || || | Sbjct 11307 ACCCGTTTCACTC--TGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCC 11250 Query 76533 CCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTT 76592 ||||| ||||||| ||||| || ||| | || |||||||| ||||| || | | Sbjct 11249 CCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGT 11190 Query 76593 CCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 76652 | |||| ||||| || | |||||| |||||||| ||| || || ||||| | | Sbjct 11189 TTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCC 11130 Query 76653 TACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCC 76712 | | || || || || || || || || | || ||||| || | | ||| | |||| Sbjct 11129 TCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCC 11070 Query 76713 ATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATC 76772 |||| || || || || || | |||||||||||||||| || || || || | || | Sbjct 11069 ATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAAC 11010 Query 76773 TGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTC 76832 || ||||| ||||| || |||| |||||| | || ||| || || |||||||||||| Sbjct 11009 GTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTC 10950 Query 76833 CAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCA 76892 | | ||| || || || || | ||| |||| | || || || |||||||| Sbjct 10949 CTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAG 10890 Query 76893 TTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCA 76952 ||| ||||| || ||||| |||| | ||||||||| ||||| || || || |||||| Sbjct 10889 ATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCT 10830 Query 76953 TCATGTTAAGAAGAAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAAC 77008 ||||| || || || ||||| || | || || || || ||||| || ||| Sbjct 10829 TCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTG----GTGCCTGCGTTGAAC 10774 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 | || ||||| |||||||||||||| || ||||| || || ||||| || ||||| | Sbjct 10773 AGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCC 10714 Query 77069 GCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGT 77128 || || ||||| || || ||||| ||||| || | ||| | |||||| || || || Sbjct 10713 GCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGC 10654 Query 77129 TCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 77188 || | || ||| ||||||| || ||| || || | |||||||| ||||| Sbjct 10653 TCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAG 10594 Query 77189 TAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTG 77248 | || || ||||| ||||| || || || ||| | ||||| || ||| | | |||| Sbjct 10593 AAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATTGAGGCGGTC--TTTGTTTG 10536 Query 77249 GTA--ACAATATCCA-TGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTT--AG 77303 | |||||||| | | | | | || || || || || || | | ||| || Sbjct 10535 CAAGGACAATATCTAGGGTCTCTTG-GGAGATCATGGGGGA--GTGGCGCTTGTTTAAAG 10479 Query 77304 GATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGT 77363 | ||||||||||| || | || ||||| || || || || | || || || || || | Sbjct 10478 GGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCTTTAT 10419 Query 77364 GTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGC 77423 | || || || || || || | ||||| || | ||||| || || || | || || | Sbjct 10418 GGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATCGGGGTGCTTAGTGGT-C 10360 Query 77424 AG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATAT 77482 || ||||| || || ||||| || | || || ||||| | ||| || ||||| | || Sbjct 10359 AGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGTGGTCACTCCACTGTAC 10300 Query 77483 AGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCA 77542 || ||||| || || ||||| | |||| || || |||||||| | ||| | ||| Sbjct 10299 AGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCA 10240 Query 77543 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCA 77602 ||||| | ||| || ||||| |||||||||||||||||||| ||||| | |||| Sbjct 10239 TAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGACGCGCTCCTGGCGTCCA 10180 Query 77603 T 77603 | Sbjct 10179 T 10179 Score = 104 bits (114), Expect = 3e-17 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || || || |||||||| || |||||| || | || || || |||||||||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||| | || || | || || ||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTT 75619 | |||| |||||||||| |||||| | | ||||| | ||||||||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG--GATTT 12249 >seq89243 Length=32234 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 15532 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATATGAATGT 15591 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || || || ||| | || || | ||||| ||||| || | || | | Sbjct 15592 TCAGAGACTGGCTCTGGTCAATGTAGGCACCACGGTCAGCTGCCATCTTAAGGATCATTT 15651 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||||| ||||||| | | || || | ||||||||||| Sbjct 15652 TCTGAGAGATTTCCCAAACAGTTTTGTAGAGCTGCTTTAGATCATCTGGAA 15702 Score = 102 bits (112), Expect = 1e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| |||||| || || ||| ||||| ||| |||| || || | |||||||||| Sbjct 16494 TCCTTTGCTAACAGGAGAACCAGCATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTC 16553 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053 || ||||| || ||| | |||||||| || || ||||||| | || |||| || Sbjct 16554 AGTGCTGGCCTCCAAGGCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTG 16613 Query 76054 CGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAAC 76113 || || ||| ||||| |||||| | | ||||| || || || || || ||||| || Sbjct 16614 GGCCTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGAC 16673 Query 76114 TCCAATACCAATAGGTCTATG 76134 || || ||||||||||| || Sbjct 16674 ACCGATCCCAATAGGTCTGTG 16694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || |||| |||| | | | || || || || |||| |||||| || || ||||||||| Sbjct 18104 CTGGACAGTTGAGGTTTATTGGTGCCAGCGTTGAACAGTGTAGGGGAGGCGTGAGTGAAC 18163 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 ||||| || || || || ||||| || ||||| |||| || ||||| || |||||| Sbjct 18164 CATTTCTCTGAGAGCAGGTTGTAGGTCTCAATGGCTGCGTCCATATCTTGTTTATGAATC 18223 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGG 77124 || ||||| || | ||| | ||||||||| || Sbjct 18224 CCAACAGCCACTCTCATGAGCATATGCTGCGG 18255 >seq62746 Length=64918 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||| | || || ||||||||||| || | |||||| Sbjct 62143 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTTTC 62084 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||| | ||||| || || |||||||| ||||| || || |||||||| || || || Sbjct 62083 AGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACGCC 62024 Query 46774 ACAAGTCTCTCTCC 46787 |||| ||| || || Sbjct 62023 ACAATTCTTTCACC 62010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711543785806080