Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq130048 107 4e-18 >seq130048 Length=4274 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||| ||||||||||| |||| | || | || ||| Sbjct 2164 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 2223 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | || |||||||| || Sbjct 2224 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 2283 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| ||| || || ||||| || || Sbjct 2284 TGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 2343 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| |||| |||||| Sbjct 2344 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 104 bits (114), Expect = 5e-17 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | ||||| || || ||||| ||||||||||| |||| | ||| Sbjct 2383 CTGAGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTG 2442 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || || ||| ||||| ||||| ||||||||||| || | | || || Sbjct 2443 CGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCC 2502 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || || || | || | |||| ||| ||| || ||| Sbjct 2503 TCCTTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTC---ACTGGGCTCAACCTCA 2559 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||| ||||| || |||| ||||| || Sbjct 2560 AGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATGTT 2606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151513950209524