Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq63492 179 5e-40 seq119257 89.7 7e-13 seq130778 87.8 3e-12 >seq63492 Length=65416 Score = 179 bits (198), Expect = 5e-40 Identities = 158/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||| ||| |||| ||||| | || ||||||||||| |||||||||||| | |||||| Sbjct 9103 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAGGTGCTCGGCTTCCAGTACTCGGGGGAG 9162 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| |||||||||| |||||||||||||| ||||||| ||| | ||| || Sbjct 9163 CAGATGGCGTTTCCCATGAGGCCCTTGAGGGAGAACGGGGCCCCCATCTCCACCATGGTC 9222 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| |||||||| | |||||| ||||||| | || | |||||||||||| Sbjct 9223 TCCCCGAATATGGCGTTCTCCCTGGGCTTCTCCACCAGCAGGCCCGGGTACAGCTCCACG 9282 Query 8531 GCCTCGACGTCTCCGTA 8547 || || |||| |||||| Sbjct 9283 GCGTCCACGTGTCCGTA 9299 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | |||||||| | |||||||| || |||||| ||| | || || | Sbjct 11785 CCGATCAGGATGAGTCTCGCCGTCTGGAAGAGCCTCTCGTCGTCCCAGTAGGGGTGCACC 11844 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | || || || |||||||||| |||||| || | ||||||||| ||||||||||||||| Sbjct 11845 TCCTTGAGCACGTCGCACACCCGGTTGTGCTCGCGGAGCCAGATGGTGGCGTACATCATG 11904 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || || |||||||| || ||||| || || || || Sbjct 11905 AGGCCGGGGACCAGGCCGAACGCCTCGTGTCCCACCGC 11942 >seq119257 Length=8728 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400 |||||| || |||||||| | || || ||||| || || ||||| ||||||||||| Sbjct 2357 AGTTGCACTTTTGACGATGCGAAAGCCAGTCTCTCCTCCAAATGTGCTTGGCTTCCAGTA 2416 Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTC 8460 ||| ||||||| | || | | | ||||| || ||||| ||||| |||| ||| Sbjct 2417 TTGCGGTGAGCAGAGGGGATTTCCGAGCAAACCTTTCAGAGAGAAAGGAGCACCCATCTC 2476 Query 8461 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8520 | || ||||| || |||||||| || || | || |||| || | || || || Sbjct 2477 CACCATACTCTCCCCAAAGATGGCACCAGGCCGTGTTTTCTCCAACATCACACCTGTATA 2536 Query 8521 CAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||||| ||| || | || || |||||| || Sbjct 2537 AAACTCCAGAGCATCTATATCCCCATAAAGGTCC 2570 >seq130778 Length=4134 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||| |||| ||| | |||||||| || ||||| ||| ||| | |||||| Sbjct 2580 TCACCAATAATAATGAATCGTGCAGTCTGGAAAAGCTGCTCATCATCCCAATGTGGATGC 2639 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||||||| || ||||| |||||||||||||| ||||| || ||| | |||||| Sbjct 2640 AGAGTCTTCAGAATGTCACACACTCTGTTGTGTTCCCTCAGCCAAATTGTGCCATACATC 2699 Query 9352 ATGAGCCCAGGTACCAGGCCAAA 9374 | |||||| | || ||||| Sbjct 2700 CCCAACCCAGGAAGAAGTCCAAA 2722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715478495957760