Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq130048 127 2e-24 seq94371 82.4 7e-11 >seq130048 Length=4274 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| || ||||| ||||| ||||||||||||||||| Sbjct 2158 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2217 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || ||||| | ||| || || | |||| || ||| Sbjct 2218 CCGTCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCC 2277 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | |||||||| | ||||||||||| || Sbjct 2278 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTG 2337 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 2338 ATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||||||||| ||||| | || || ||||| |||||||| || Sbjct 2413 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAG 2472 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| || || | ||||| || ||||||||| ||| || |||| ||| Sbjct 2473 ATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTC-ACGTT 2531 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| || | ||| ||||| | || || |||||||| || || ||||| || Sbjct 2532 TTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGAC 2591 Query 41851 GAAAATCTGCATGTT 41865 || || |||||||| Sbjct 2592 AAAGATTTGCATGTT 2606 >seq94371 Length=7202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| |||||||| || |||||| |||| || ||||| ||||||||||| ||| Sbjct 3105 TTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCCTCCAGCTGTTTGCCGGCGAAGATC 3164 Query 41735 AGGCGCTGTTGGTCCGCGGG 41754 || ||||| || || | ||| Sbjct 3165 AGACGCTGCTGATCGGGGGG 3184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461402252932800