Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3989 105 8e-18 seq4702 93.3 5e-14 >seq3989 Length=9007450 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || ||||| | || ||||| || ||||| || ||||| ||||| | ||||| Sbjct 3293029 CCTCATCCCTGCTAATGAGCTCATTGGAGAATGTGAGACCAGGCATCAGGCCCCTCTTTT 3293088 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || | |||||||| ||||| |||||||||||||| ||||| ||||||| Sbjct 3293089 TCAACCAGAAAATTGCAGCAAATGACCCAGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 3293148 Query 24277 C 24277 | Sbjct 3293149 C 3293149 >seq4702 Length=3596321 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | ||||| || ||||| || || | ||| | Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| | || | |||||| || ||||||||||| ||||| || ||||| ||||||| Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGG 2020046 Query 24277 C 24277 | Sbjct 2020047 C 2020047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593685835695120