Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3916 114 2e-20 seq4332 96.9 4e-15 >seq3916 Length=6725481 Score = 114 bits (126), Expect = 2e-20 Identities = 181/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||||||||||||||| | ||| || || ||||| || |||| ||| ||| Sbjct 5500975 GAACTTCTCGAAGTTCCAGGCGATGTCATTCCGACACACGGGGCTCCAGATGATGTGCTT 5500916 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT-AGGA 83261 ||||||| | | ||| | | ||||||||| || ||||| || || | |||| Sbjct 5500915 GGGGTCGTTTATGAGGGACGTGGAGTCGTCGCTGGGGAAAGGCAGCTTCT-TCTTGAGGA 5500857 Query 83262 AGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 | |||| | |||||| || |||| | |||| || || ||||| || ||| || Sbjct 5500856 ACACGAACAACGGATGGGCGTCCTTCC--CGTTCACATCTGCTTTCTCCAACAGCTGGAA 5500799 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 || ||||| ||||||||||| |||||||||| ||| ||||| | |||||| |||| Sbjct 5500798 CTTGGGCTCAAAGCCGTTCCCTGGACGGACGTACTTGAGGGAGCTGAGGATCTCCTCATT 5500739 Query 83380 CTGGGCGTTTTCCTG 83394 || ||| ||||| Sbjct 5500738 CTTACAGTTCTCCTG 5500724 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || | ||| | ||| || |||||| | | || Sbjct 5500536 CCTGGTGTCCGAACTGGTTGCAGGGAACCCCCAACACGACGAGCCCCTTGTCGGCGTAGC 5500477 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||||||||||| ||||| |||| | || | |||||||| ||||| | Sbjct 5500476 GCGCCTGCAGCTCGTTCATCTGGGTGTAGTCCCTGGTGGTCGTTCCTCAGAGAGACGCCA 5500417 Query 83511 CGTTCTCGATGAGCA 83525 ||||||||||||||| Sbjct 5500416 CGTTCTCGATGAGCA 5500402 >seq4332 Length=4495564 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| |||||| || | ||||||||| |||| ||| || Sbjct 200215 GAACTTCTCGAAGTTCCAGGACACGTCATTCCTGCACACTGGGCTCCAGATGATGGCCTT 200156 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 ||||| ||| ||| | || ||| || | || || | | |||| | ||| Sbjct 200155 TGGGTCATTCATGAGGGACATCGGGTCATCAGTGGGGAATGGTA--ACTTCTCCTTAAGG 200098 Query 83261 AAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 ||| |||| | || ||||| |||||| || || ||| |||||| | || || Sbjct 200097 AAGACGAACAATGGGTGTGCGTCTGCACCATTCACTTCGATCTTCTCTAGAAGTTGGAAT 200038 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 || ||||| ||||| || || |||||||| | ||||||||| || |||||| | ||| Sbjct 200037 TTAGGCTCAAAGCCATTTCCCGGACGGACATACTTCAGGGAGTTCAGGATCTCATCGTTC 199978 Query 83381 T 83381 | Sbjct 199977 T 199977 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || ||| || | || |||||| | | || Sbjct 198573 CCTGGTGGCCGAACTGGTTGCAGGGCGCCCCGAGGATCACGAGCCCCTTCTCGGCGTAGC 198514 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||||||||||||||||| ||||| |||| | || | |||||||| || || | Sbjct 198513 GCGAGTGCAGCTCGTTCATCTGGGTGTAGTCCCTGGTGGTCGTGCCTCAGAGCGAAGCCA 198454 Query 83511 CGTTCTCGATGAGCA 83525 | ||||||||||||| Sbjct 198453 CATTCTCGATGAGCA 198439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608760127602760