Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4299 145 8e-30 seq4004 138 1e-27 seq3989 87.8 2e-12 >seq4299 Length=10599567 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||||||||| ||||||||| | || || ||| ||| | Sbjct 10425880 ATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 10425939 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||| | |||||||| ||||| || | ||||| Sbjct 10425940 GACACAATTGAGAACG-TGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 10425998 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| || ||||| || | |||||||| ||||||||| Sbjct 10425999 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAA 10426058 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | || | ||||| ||| Sbjct 10426059 CATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTCAGGGGGGGC 10426107 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||||||||| ||||||||| | || || ||| ||| | Sbjct 10426108 ATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 10426167 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||| | |||||||| ||||| || | ||||| Sbjct 10426168 GACACAATTGAGAACG-TGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 10426226 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| || ||||| || | |||||||| ||||||||| Sbjct 10426227 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAA 10426286 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| | || | ||||| || Sbjct 10426287 CATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTCAGGGGAGG 10426334 >seq4004 Length=1791360 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 83480 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 83421 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 83420 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83361 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 83360 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83301 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 83300 ATCCAGAAGGAGTCGACCCTCCACCTCGT 83272 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 83708 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 83649 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 83648 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83589 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 83588 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83529 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 83528 ATCCAGAAGGAGTCGACCCTCCACCTCGT 83500 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 83936 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 83877 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 83876 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83817 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 83816 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83757 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 83756 ATCCAGAAGGAGTCGACCCTCCACCTCGT 83728 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 84167 AAGATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 84108 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| ||||| | ||||| || ||||| ||| | ||| Sbjct 84107 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGAC 84048 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCG-CACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||| | || | ||| |||||| |||||| Sbjct 84047 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGAA-GATGGGCGGCACCCTGTCCGACTA 83989 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || || || || Sbjct 83988 CAACATCCAGAAGGAGTCGACCCTCCACCTCGT 83956 >seq3989 Length=9007450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||||||| |||||||| |||||| | || || || || ||||| || || Sbjct 3293787 TCAGGTGGAGCGTTTCAGCCAGGAGGTACAGGTGACAGAAGCCCGCTGTTTCTATGGTTT 3293728 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| || |||||||||||| | ||||| |||||||| Sbjct 3293727 TCAAATTGCCATGGAGAACATCCACTCAGAAATGTA 3293692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515188164483440