Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3899 113 5e-20 seq3913 107 2e-18 seq4332 102 9e-17 seq4267 98.7 1e-15 seq4031 98.7 1e-15 seq3966 98.7 1e-15 seq3896 98.7 1e-15 seq4643 96.9 4e-15 seq4047 96.9 4e-15 seq4732 95.1 1e-14 >seq3899 Length=9633309 Score = 113 bits (124), Expect = 5e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 5146306 AAAATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 5146247 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| |||||| Sbjct 5146246 CACCACTATACTAACGAGGA 5146227 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 5147208 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 5147149 Query 60125 ATACTACCGAGGATTGAATATATAA 60149 |||||| |||||| || |||||| Sbjct 5147148 ATACTAACGAGGA--CAACATATAA 5147126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 6890377 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6890436 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6890437 TACTAACGAGGA 6890448 >seq3913 Length=1546322 Score = 107 bits (118), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 60051 TTTATGAAAAATT---TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107 |||| ||||||| |||||| || | ||||||||||||| |||||||||||||||||| Sbjct 677176 TTTAGAAAAAATTGTTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGG 677117 Query 60108 CGGACATACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||||||||| |||||| Sbjct 677116 CGGGGATACTCACCACTATACTAACGAGGA 677087 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 679379 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 679320 Query 60123 CTATACTACCGAGGATTGAATATATAA 60149 |||||||| |||||| |||||||| Sbjct 679319 CTATACTAACGAGGAGATGATATATAA 679293 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||| ||| ||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 679097 AAAACTTTCGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 679038 Query 60115 ACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| |||||| Sbjct 679037 ACTCACCACTATACTAACGAGGA 679015 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 235110 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 235169 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 235170 ATACTAACGAGGA 235182 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 676870 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 676811 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 676810 ATACTAACGAGGA 676798 >seq4332 Length=4495564 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1853005 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1852946 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1852945 TATACTAACGAGGA 1852932 >seq4267 Length=1569155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 965316 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 965375 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 965376 TATACTAACGAGGA 965389 >seq4031 Length=4291168 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1865828 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1865887 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1865888 TATACTAACGAGGA 1865901 >seq3966 Length=9919444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1791100 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1791041 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1791040 TACTAACGAGGA 1791029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||| ||| ||||||||||||||||||||| ||||||||||||| Sbjct 1790725 CTCCCCGTCGGGGAATCGACCCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1790784 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1790785 TACTAACGAGGA 1790796 >seq3896 Length=5725001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 749367 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 749308 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 749307 TACTAACGAGGA 749296 >seq4643 Length=11069196 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8106216 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 8106275 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8106276 ATACTAACGAGGA 8106288 >seq4047 Length=290122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||| ||||| Sbjct 125915 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACT 125974 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 125975 ATACTAACGAGGA 125987 >seq4732 Length=5177925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4175882 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4175941 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4175942 TACTAACGAGGA 4175953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571783155137320