Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4299 116 2e-21 seq4004 109 4e-19 >seq4299 Length=10599567 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||||||||| ||| | || Sbjct 10426091 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 10426032 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| || || || |||| ||||||||| || | || || ||||| Sbjct 10426031 TCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 10425972 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | || | ||| | | ||| || |||| |||||||| Sbjct 10425971 TGGAT-TTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGT 10425913 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||||||||||||||| Sbjct 10425912 CTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||||||||| ||| | || Sbjct 10426319 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 10426260 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| || || || |||| ||||||||| || | || || ||||| Sbjct 10426259 TCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 10426200 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | || | ||| | | ||| || |||| |||||||| Sbjct 10426199 TGGAT-TTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGT 10426141 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||||||||||||||| Sbjct 10426140 CTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 >seq4004 Length=1791360 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| || | || |||| ||||||||| ||||| Sbjct 83518 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 83577 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||||| || ||||| ||| | || Sbjct 83578 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACAT 83635 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| |||||||| || || |||| Sbjct 83636 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 83695 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 83696 CGAAGATCTGCAT 83708 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| || | || |||| ||||||||| ||||| Sbjct 83746 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 83805 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||||| || ||||| ||| | || Sbjct 83806 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACAT 83863 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| |||||||| || || |||| Sbjct 83864 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 83923 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 83924 CGAAGATCTGCAT 83936 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || ||||| ||||||||||||||| Sbjct 83254 CCGCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83313 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || |||| ||||||||| ||| Sbjct 83314 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 83373 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||||| ||| | || | || | || | | || | Sbjct 83374 ATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 83431 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| |||||||| || || ||||| ||||||||||| Sbjct 83432 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83480 Score = 100 bits (110), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGC-TGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||||||||| || || | || || | ||||||||| || || Sbjct 83974 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAAA 84032 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 || |||| ||||||||| ||| | || |||||||| || ||||| ||| | | Sbjct 84033 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACA 84090 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | || | | || || || | |||||||| |||||||| || || ||| Sbjct 84091 TTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTC 84150 Query 34376 ACAAAGATCTGCATC 34390 ||||||||||||||| Sbjct 84151 ACAAAGATCTGCATC 84165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323053025476640