Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4054 307 7e-79 seq3797 307 7e-79 seq4425 89.7 4e-13 >seq4054 Length=608398 Score = 307 bits (340), Expect = 7e-79 Identities = 635/937 (68%), Gaps = 12/937 (1%) Strand=Plus/Plus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 ||||| | || ||| | |||| |||||||| || || |||||| |||| ||||| |||| Sbjct 600547 TGAGTGAGGAGGAGAAACACTTTCCCATTGCTTATTCCATGGTGATCCACGAGAAAATTG 600606 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 ||| || || |||||||||| || || |||| || || || | |||||||| || | Sbjct 600607 AAATGTTCGAGAGGCTGCTGCGTGCTGTTTATGTGCCACACAATGTGTACTGTGTTCATG 600666 Query 107812 TGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 ||||| || || | ||| ||||| | || || | ||||||| | |||||||| | Sbjct 600667 TGGATCAAAAATCATCTGAGGACTTCAAGAATGCTGTGAGGGCCATTGTGTCCTGCTTTC 600726 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 ||||||| || |||| || | ||| ||||| || || |||||||| || || | Sbjct 600727 CCAATGTGTTTGTGGCAAGCAGACTGGAAAATGTGGTGTACGCATCCTGGTCAAGGGTAC 600786 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCATGGAAGTACTTA 107990 | |||||||| ||||| ||||| |||||||| | | ||| || | ||||||||| | Sbjct 600787 AGGCTGACCTAAACTGCATGGAGGACTTGCTGAA-ATCTCCCGTTCAGTGGAAGTACCTG 600845 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||| || || || || ||||| || || || || |||||||| || |||| ||| Sbjct 600846 CTGAACACCTGTGGAACCGACTTTCCTATCAAAACAAATGCCGAAATAGTCCAAAATCTC 600905 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 | | || | || || || ||||| ||||| ||||||| | |||||| ||||||| | Sbjct 600906 AGGTTGCTCAATGGGAAAAACAGCATGGAATCTGAGGAGACATCTGAGCACAAAAAAGAC 600965 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170 || ||| ||||| ||| | | ||| |||| || ||||||| | |||| Sbjct 600966 CGTTGGCGATACCACTACAATATCACAAACACTGTGGCAAGGACCAGCATTAAGAAGAGT 601025 Query 108171 CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCC 108230 || || || | |||||||||| |||| ||||| || ||||||| | || | Sbjct 601026 CCCCCACCAATCAGCACACCCATGTTCTCAGGCAATGCTTACTTTGTGGTGACACGGGAA 601085 Query 108231 TTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGAC 108290 ||||| |||| | || || | | | | | || ||||||||| || ||| Sbjct 601086 TTTGTGAGACATATTTTTGAAAGCAAGGAGGTCTTGAATTTGCTTGAATGGGCAAAGGAC 601145 Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGC 108350 |||||||| || || ||| | ||||||| ||||| || || ||||||||| Sbjct 601146 ACCTATAGTCCTGATGAATTCATCTGGGCTACCCTGTTTCGGATGCCAGCGATGCCTGGA 601205 Query 108351 TCTGTTCCTAGCC--ACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCG 108408 || ||| ||| || ||| | || ||||| |||| ||| | || | || | Sbjct 601206 TCCTATCC--GCCTAACAGCAAATTCCAACAGTCAGATATGAATGCATTGGCTCGACTGG 601263 Query 108409 TCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTG 108468 | |||||| || | || || ||||| || | ||| || || ||| | || || ||| Sbjct 601264 TGAAGTGGAGTTATCTGGAAGGGGATGTGAGGAGGGGAGCCCCGTATCCCCCGTGTACTG 601323 Query 108469 GAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA 108528 || | || | ||| || | || || | || ||||||||| || ||||||| | | Sbjct 601324 GAGTTCACCAGAGAGCTGTTTGTATCTTTGGCGCCGGGGACTTGCACTGGATGATTCGTC 601383 Query 108529 ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGT--CCTGCAG-T 108585 | || ||||| || ||||| |||||||| | ||| |||| |||| || ||| | Sbjct 601384 AGCACCACCTTTTCGCAAATAAGTTTGATCTTCAGGT---TGATGACGTTGCCATCAGAT 601440 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || ||||| || || ||| | || || ||| |||| Sbjct 601441 GCCTAGAAACATATCTTCGTTACAAAGCAATCCATGG 601477 >seq3797 Length=1547 Score = 307 bits (340), Expect = 7e-79 Identities = 635/937 (68%), Gaps = 12/937 (1%) Strand=Plus/Minus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 ||||| | || ||| | |||| |||||||| || || |||||| |||| ||||| |||| Sbjct 1198 TGAGTGAGGAGGAGAAACACTTTCCCATTGCTTATTCCATGGTGATCCACGAGAAAATTG 1139 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 ||| || || |||||||||| || || |||| || || || | |||||||| || | Sbjct 1138 AAATGTTCGAGAGGCTGCTGCGTGCTGTTTATGTGCCACACAATGTGTACTGTGTTCATG 1079 Query 107812 TGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 ||||| || || | ||| ||||| | || || | ||||||| | |||||||| | Sbjct 1078 TGGATCAAAAATCATCTGAGGACTTCAAGAATGCTGTGAGGGCCATTGTGTCCTGCTTTC 1019 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 ||||||| || |||| || | ||| ||||| || || |||||||| || || | Sbjct 1018 CCAATGTGTTTGTGGCAAGCAGACTGGAAAATGTGGTGTACGCATCCTGGTCAAGGGTAC 959 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCATGGAAGTACTTA 107990 | |||||||| ||||| ||||| |||||||| | | ||| || | ||||||||| | Sbjct 958 AGGCTGACCTAAACTGCATGGAGGACTTGCTGAA-ATCTCCCGTTCAGTGGAAGTACCTG 900 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||| || || || || ||||| || || || || |||||||| || |||| ||| Sbjct 899 CTGAACACCTGTGGAACCGACTTTCCTATCAAAACAAATGCCGAAATAGTCCAAAATCTC 840 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 | | || | || || || ||||| ||||| ||||||| | |||||| ||||||| | Sbjct 839 AGGTTGCTCAATGGGAAAAACAGCATGGAATCTGAGGAGACATCTGAGCACAAAAAAGAC 780 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170 || ||| ||||| ||| | | ||| |||| || ||||||| | |||| Sbjct 779 CGTTGGCGATACCACTACAATATCACAAACACTGTGGCAAGGACCAGCATTAAGAAGAGT 720 Query 108171 CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCC 108230 || || || | |||||||||| |||| ||||| || ||||||| | || | Sbjct 719 CCCCCACCAATCAGCACACCCATGTTCTCAGGCAATGCTTACTTTGTGGTGACACGGGAA 660 Query 108231 TTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGAC 108290 ||||| |||| | || || | | | | | || ||||||||| || ||| Sbjct 659 TTTGTGAGACATATTTTTGAAAGCAAGGAGGTCTTGAATTTGCTTGAATGGGCAAAGGAC 600 Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGC 108350 |||||||| || || ||| | ||||||| ||||| || || ||||||||| Sbjct 599 ACCTATAGTCCTGATGAATTCATCTGGGCTACCCTGTTTCGGATGCCAGCGATGCCTGGA 540 Query 108351 TCTGTTCCTAGCC--ACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCG 108408 || ||| ||| || ||| | || ||||| |||| ||| | || | || | Sbjct 539 TCCTATCC--GCCTAACAGCAAATTCCAACAGTCAGATATGAATGCATTGGCTCGACTGG 482 Query 108409 TCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTG 108468 | |||||| || | || || ||||| || | ||| || || ||| | || || ||| Sbjct 481 TGAAGTGGAGTTATCTGGAAGGGGATGTGAGGAGGGGAGCCCCGTATCCCCCGTGTACTG 422 Query 108469 GAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA 108528 || | || | ||| || | || || | || ||||||||| || ||||||| | | Sbjct 421 GAGTTCACCAGAGAGCTGTTTGTATCTTTGGCGCCGGGGACTTGCACTGGATGATTCGTC 362 Query 108529 ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGT--CCTGCAG-T 108585 | || ||||| || ||||| |||||||| | ||| |||| |||| || ||| | Sbjct 361 AGCACCACCTTTTCGCAAATAAGTTTGATCTTCAGGT---TGATGACGTTGCCATCAGAT 305 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || ||||| || || ||| | || || ||| |||| Sbjct 304 GCCTAGAAACATATCTTCGTTACAAAGCAATCCATGG 268 >seq4425 Length=11942861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 216/324 (67%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 107708 AGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCT 107767 ||| || ||| |||| ||||| || ||| | || | ||||| |||| || ||| | || Sbjct 3024781 AGAATTTCCCCTTGCATACTCCATAGTGATTCACCACAAGATCCAAAATTTCGAAAGACT 3024840 Query 107768 GCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC 107827 ||| | ||| | ||||| |||||||| | ||||| |||||||||| || ||| | Sbjct 3024841 GCTTAGGGCCATTTATGCACCTCAGAATTTTTACTGCATCCACGTGGACAACAAATCCGC 3024900 Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887 | ||| | | ||| || | ||| | ||||||||| ||| || | || | Sbjct 3024901 ACCATTATTCCAGGCGGCTGTAGCTGGAATTGTCTCCTGCTTCGACAACGTTGTGATTTC 3024960 Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTG 107947 ||| || ||| || || |||||| |||| ||| || ||||||||| | ||||| Sbjct 3024961 CAGCAAACTGGAGAATGTAGTGTATGCCAGCTGGAGCAGGGTCCAAGCTGACATCAACTG 3025020 Query 107948 TATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAGTACTTACTGAATACATGCGG 108004 ||| |||| ||| | | | | || | ||||||||||| | || ||||| Sbjct 3025021 CATGAGAGAC---CTCTATAACATGAGCCCTCGTTGGAAGTACTTCATCAACCTCTGCGG 3025077 Query 108005 GACAGACTTCCCCATAAAGACCAA 108028 |||||| || ||||| ||||| Sbjct 3025078 CCAAGACTTTCCAATAAAAACCAA 3025101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348248345629206