Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4004 114 1e-20 seq4299 111 2e-19 >seq4004 Length=1791360 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 83253 GCCGCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83312 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || ||||| ||||||| | ||||| || || || Sbjct 83313 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83372 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || | | || | ||||| |||||||||| Sbjct 83373 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83432 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 83433 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83480 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 83481 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83540 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || ||||| ||||||| | ||||| || || || Sbjct 83541 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83600 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || | | || | ||||| |||||||||| Sbjct 83601 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83660 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 83661 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83708 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 83709 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83768 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || ||||| ||||||| | ||||| || || || Sbjct 83769 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83828 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || | | || | ||||| |||||||||| Sbjct 83829 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83888 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 83889 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 83937 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83996 Query 139597 CATTGTGCT-CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| | ||||| ||||| || |||||| ||||||| | ||||| || || | Sbjct 83997 CAGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 84055 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| ||||| |||||| || | | || | ||||| ||||||||| Sbjct 84056 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 84115 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||||||||| | || || || || || ||||| Sbjct 84116 CCTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 84164 >seq4299 Length=10599567 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || |||| ||||| || || Sbjct 10426083 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGTTG 10426024 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||| || ||||| |||||||||||||| |||||| Sbjct 10426023 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 10425964 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | ||||||| |||| || ||||| | ||| | |||||||| || Sbjct 10425963 CGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCCGT 10425904 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || || || || ||||| Sbjct 10425903 GAGCGTCTTCACAAAGATCTGCAT 10425880 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || |||| ||||| || || Sbjct 10426311 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGTTG 10426252 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||| || ||||| |||||||||||||| |||||| Sbjct 10426251 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 10426192 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | ||||||| |||| || ||||| | ||| | |||||||| || Sbjct 10426191 CGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCCGT 10426132 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || || || || ||||| Sbjct 10426131 GAGCGTCTTCACAAAGATCTGCAT 10426108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034118344800