Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3989 111 2e-19 seq4702 102 8e-17 >seq3989 Length=9007450 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || ||||| || || || || ||||| | || ||||||| || | |||| Sbjct 3293029 CCTCATCCCTGCTAATGAGCTCATTGGAGAATGTGAGACCAGGCATCAGGCCCCTCTTTT 3293088 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || ||||||||||||||||| || ||||| ||||| || ||||||||||| | Sbjct 3293089 TCAACCAGAAAATTGCAGCAAATGACCCAGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 3293148 Query 14014 CTATTAATCGTTCTCC 14029 | | || ||||| || Sbjct 3293149 CCACTACACGTTCACC 3293164 >seq4702 Length=3596321 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || |||| | |||||||| | || | || | Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| | ||||| ||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGG 2020046 Query 14014 CTATTAATCGTTCTCC 14029 ||| || ||||| || Sbjct 2020047 CTACCAACCGTTCCCC 2020062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479699102384600