Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3989 102 8e-17 seq4702 87.8 2e-12 >seq3989 Length=9007450 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| || ||||| || || || || ||||| | || ||||||| || | |||| Sbjct 3293029 CCTCATCCCTGCTAATGAGCTCATTGGAGAATGTGAGACCAGGCATCAGGCCCCTCTTTT 3293088 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || |||||||| ||||| || || ||||| ||||| || ||||||||||| | Sbjct 3293089 TCAACCAGAAAATTGCAGCAAATGACCCAGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 3293148 Query 13802 CTATTAGTCGTTCTCC 13817 | | || ||||| || Sbjct 3293149 CCACTACACGTTCACC 3293164 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | ||| |||||||| ||||| ||||| || || || || ||| Sbjct 3293668 ATGTAGGTGTCAATAAGGAGGCTGTACATTTCTGAGTGGATGTTCTCCATGGCAATTTGA 3293727 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 |||||||| ||||| | ||||||| | ||||||||| Sbjct 3293728 AAACCATAGAAACAGCGGGCTTCTGTCACCTGTACCTCC 3293766 >seq4702 Length=3596321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || || ||||| || || |||| | |||||||| | || | || | Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| | ||||| || || || || |||||||| |||||||| ||||||||||| | Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGG 2020046 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 2020047 CTACCAACCGTTCCCC 2020062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478559971007160