Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4702 102 1e-16 seq3898 84.2 3e-11 >seq4702 Length=3596321 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| | ||||| || ||||| || || | ||| | Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| | || | |||||| || ||||||||||||||||| || ||||| ||||||| Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGG 2020046 Query 42207 C 42207 | Sbjct 2020047 C 2020047 >seq3898 Length=2399012 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | || || ||||||||||| || || || || || || | || || || | Sbjct 240184 CACTGAAAACCTTCTTGGTTTCCTTGTGCAGGTTGGACACAGCAATGCGTGCAGCCAGGA 240125 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| || || | | ||||| ||||| | ||| || || ||||||||||||| Sbjct 240124 TTGCATAGTCAGGGTACTTGGTAGTGAGGGTGGCAGTTATCTCAGCAGCCAGAGTGTCCA 240065 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | || | || ||||| |||||||| Sbjct 240064 GTTCCACTGTGGTCACGCCACTGTAGAGCCCCTGGATGACCTTCAT 240019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098772252440