Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3989 104 5e-17 seq4020 89.7 1e-12 >seq3989 Length=9007450 Score = 104 bits (114), Expect = 5e-17 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 ||| | |||||||| || || || ||||| | |||||||| || || ||||||||||| Sbjct 4849717 GCACTCTGGTGGTACTACATTTCCAAAGGTGTGGAATACCTTGACACAGTCTTCTTCATC 4849776 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT- 78606 | || |||||||| || ||| | || ||||| || || || || || | ||| ||||| Sbjct 4849777 TTGCGTAAGAAATTCAACCAAGTCAGCTTTCTGCACGTGTACCACCACTGTACCATGTTC 4849836 Query 78607 -TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | || ||| ||||| || || |||||| | || |||||||| Sbjct 4849837 ATCCTCTGG--TGGATTGGCATCAAATGGGTGGCTGGAGGACA 4849877 >seq4020 Length=2648434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || |||||||| | || || || ||||| ||||| Sbjct 1596343 CCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATCGTGTCACTGGGTTCCACCTCA 1596402 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || | ||||| ||||| |||||||| || Sbjct 1596403 AGGGTGATGGTCTTCCCCGTTAAAGTTTTCACAAAAATCTGCATCTT 1596449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151327308704852