Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq4343 129 4e-25 >seq4343 Length=2653754 Score = 129 bits (142), Expect = 4e-25 Identities = 129/166 (78%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 ||||| | || || || |||||||| ||||| || ||||||||||||||| |||||| Sbjct 516818 AGCCCTGCAATGTGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGT 516877 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| ||||||| | |||||| |||||| ||||| || || ||||| ||||||| Sbjct 516878 ACGCCGAGGCCCATGT-CTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTCGCT 516936 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 |||||| ||||| |||| | || ||| || || | ||| || ||| Sbjct 516937 CACGTAGAACTGGCACAGAGCGTGGCAGGGGGGCAAAGCCATCAGG 516982 Score = 114 bits (126), Expect = 9e-21 Identities = 134/180 (74%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| || | | ||||||||| ||||| || || || ||||| Sbjct 518034 CATGTCTTTGTATTCTGCTCCAAAGTGGCGCCACTGGAAACCGTAGACAGGCCCCAGGTC 518093 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || ||| | || || |||| |||| || || | || |||||||| || Sbjct 518094 ACCCTCCTCTCTGGACGTGAACCCATTCTTGTCCAGGAATTCACGAGACCCATTGGCATC 518153 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 ||||||||| || |||||||| || ||||| |||| || ||||| || ||| |||| || Sbjct 518154 CCAGATCTTGACGCCCTTCTCAGAAAGCTCCTTGGCATTGGTGGAGCC-CTGCCGAAGCA 518212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340117623187287