Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3926 87.8 9e-13 seq4035 86.0 3e-12 seq4096 82.4 4e-11 seq3966 82.4 4e-11 seq3899 82.4 4e-11 seq3884 82.4 4e-11 >seq3926 Length=8898194 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 482929 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 482870 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 482869 CTGAGCTAACCGGCCGT 482853 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 6396249 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 6396190 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 6396189 AACTGAGCTAACCGGCC 6396173 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6394705 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6394646 Query 11528 CC 11529 || Sbjct 6394645 CC 6394644 >seq4035 Length=1527254 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1351308 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1351249 Query 11528 CC-GTCGA 11534 || ||||| Sbjct 1351248 CCTGTCGA 1351241 >seq4096 Length=10878298 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 7561651 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7561710 Query 11528 CC 11529 || Sbjct 7561711 CC 7561712 >seq3966 Length=9919444 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1805928 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1805869 Query 11528 CC 11529 || Sbjct 1805868 CC 1805867 >seq3899 Length=9633309 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5145928 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5145869 Query 11528 CC 11529 || Sbjct 5145868 CC 5145867 >seq3884 Length=1547801 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 253067 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 253008 Query 11528 CC 11529 || Sbjct 253007 CC 253006 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475842213244