Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4257 118 2e-21 seq3887 107 3e-18 seq4247 98.7 1e-15 >seq4257 Length=10342467 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | |||||||| || | | || ||| ||| | ||||| || | ||||| Sbjct 3853217 ATGAGCCTCGTGGTCTGGAAAATGCGCTCATCATCCCAGCCGGGATGCTCCTGCTTCAGC 3853158 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||| ||||| |||| |||||||| || || |||||||| || || || Sbjct 3853157 ACATCACAGACTCGATTGTGCTCCCGCAGCCAGATTGTGGCATACATCATAAGTCCTGGG 3853098 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||||||||| || || ||||| || || | ||| | || || || | |||||| Sbjct 3853097 ACCAGGCCAAAGGCTTCATGACCCACTGCAAAACGGTGCTCCTCAGGAACATGAGGAGGA 3853038 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 ||| ||| | ||| |||||||| || || | || ||||| || || || Sbjct 3853037 TAGTGCATCTCCACTTGGACATCCTTTACTGTTGGAGGATAAATCTCCCC 3852988 Score = 107 bits (118), Expect = 3e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 ||||||| || | || ||||||||||| || ||||| || | || ||||| || | | Sbjct 3854501 CAAACCCGACATTCCCACCGAAGGTGCTTGGCTTCCAATACTCTGGAGAGCATATAGCAT 3854442 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||| || ||||| || ||| | ||||| |||| || | ||| |||| || |||| Sbjct 3854441 TTCCCATCAGTCCTTTCAGTGAATAGGGAGCTCCCATTTCTACCATGGTCTCTCCAAAGA 3854382 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 |||||||||| | ||||| |||| |||||| || | |||| ||||| || || || Sbjct 3854381 TGGCGTTGGGTCTTGGCTTCTCCA-CAAGAAGACCAGGATACAGCTCCATCGCATCAATA 3854323 Query 8930 TCTCCGTA 8937 || ||||| Sbjct 3854322 TCGCCGTA 3854315 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| || || | ||| ||||| ||||| | || || ||||| || | |||| | Sbjct 3852122 TCACCTGCAACTCCCATAGGTGTTGGGCAATCCTTGGGCACTGGAGGAAGGGTTCTTGTG 3852063 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||| || || | |||||||||||| ||| | || || | |||| | | Sbjct 3852062 TAATAGGAGAGGTTCGAATACGCTTCCCAGCTTTTGTAACCATAATCTGAGTTGAATGTA 3852003 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 |||||||| || ||||||| ||||| Sbjct 3852002 GGAGGGCTATCTATCAAATGAGATCT 3851977 >seq3887 Length=12445687 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8742 TGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGC 8801 ||||||| ||||||| | || || ||||||||||| |||||||| | || |||| Sbjct 11492635 TGACGATGTCAAACCCTGTTTGACCACCAAAGGTGCTGGGCTTCCAGTACTCTGGAGAGC 11492576 Query 8802 AGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCT 8861 ||||| ||| ||| ||| ||||| | |||||| || | ||| | ||| | || |||| Sbjct 11492575 AGATGGGGTTTCCCAAGAGCCCTTTCAAGGAAAAAGGTGACCCGATCTCCACCATACTCT 11492516 Query 8862 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAG 8921 ||| || ||||||||||| || | ||| || | || | | | | ||| ||||| | | Sbjct 11492515 GACCAAATATGGCGTTGGGGCGCGCCTTCTCAAGCAGCATTGCAGGGTAGAACTCTAAGG 11492456 Query 8922 CCTCGATGTCTCCGTAAAG 8940 | || || ||||| || || Sbjct 11492455 CATCAATATCTCCATAGAG 11492437 >seq4247 Length=11832447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 9685 TCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACC 9744 || || || | |||||| || | | ||||||||| || ||||||||||| ||||| ||| Sbjct 295389 TCACAGACGCGGTTGTGCTCTCGCAACCAGATAGTGGCATACATCATGAGTCCAGGGACC 295330 Query 9745 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAG 9804 || |||||||| || || || ||||||| | | || ||||| | || || || Sbjct 295329 AGACCAAAAGCTTCATGGCCCACAGCCAACTGGTGCTCCTCAGGCACATAAGGTGGGTAC 295270 Query 9805 ATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGT 9853 | ||||||||| ||| | || |||||| || || |||| ||||||| Sbjct 295269 AACATGTGCACTTGGGCCTCCCTGACCGTTGGTGGGTACACCTCACCGT 295221 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||| |||||||| ||| | || ||||| ||||| ||| | || || | | || Sbjct 294756 TCTTACTCCATGTCCAAGTGCCTTGGTGAACGCCGGTCCTTTAGACATGTCCGATTTGAA 294697 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||||| |||||||| ||| | || ||||||||||| || |||| || || ||||| Sbjct 294696 AAACTGGTGTGTGAAATGCTGGGCGAAGAAGGCAAACATCAAACTGGTTCCTTGTGGATC 294637 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | ||| || ||| ||| ||||| || Sbjct 294636 TGGGATGAATCTTTTCCTCAGCAGAACTTTCTCCACCAC 294598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708482120237360