Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4299 116 3e-21 seq4004 93.3 4e-14 >seq4299 Length=10599567 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || | ||||| ||| | ||| || ||||| || | ||| || ||| | Sbjct 10426334 CCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426275 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||| || || || ||||||| | || ||||| || |||||| Sbjct 10426274 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10426215 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||||| || || ||| | | ||||| | | || || Sbjct 10426214 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10426155 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 10426154 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCATGC 10426106 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| || ||||| || | ||| || ||| || ||| | ||| || Sbjct 10426089 CACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 10426030 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | || ||||| || |||||||| ||||||||||| | Sbjct 10426029 CAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTG 10425970 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || || ||| | | ||||| | | || || || | |||||||| || Sbjct 10425969 GATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTT 10425910 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||||||||| Sbjct 10425909 GCCCGTGAGCGTCTTCACAAAGATCTGCATGC 10425878 >seq4004 Length=1791360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| ||| |||||||| || || Sbjct 83284 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83343 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | || ||||| || || ||||| ||||| ||||| | ||||| |||||| Sbjct 83344 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83403 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || || | |||||||| || || || || || Sbjct 83404 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 83463 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 83464 TTCACGAAGATCTGCATGC 83482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| ||| |||||||| || || Sbjct 83512 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83571 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | || ||||| || || ||||| ||||| ||||| | ||||| |||||| Sbjct 83572 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83631 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || || | |||||||| || || || || || Sbjct 83632 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 83691 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 83692 TTCACGAAGATCTGCATGC 83710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || ||| ||| |||||||| || || Sbjct 83740 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83799 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | || ||||| || || ||||| ||||| ||||| | ||||| |||||| Sbjct 83800 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83859 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || || | |||||||| || || || || || Sbjct 83860 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 83919 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 83920 TTCACGAAGATCTGCATGC 83938 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 || |||||| || || ||||||| | || ||||| || || ||||| ||||| ||||| Sbjct 84012 CTTCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 84071 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||||| |||||||| | | |||||| | | || || || | |||||||| Sbjct 84072 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 84131 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 || || || || || ||||||||||||||||| | |||| Sbjct 84132 CTTGCCGGTTAGGGTCTTCACAAAGATCTGCATCTTCACAA 84172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448264196058840