Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3905 197 2e-46 seq3946 176 7e-40 seq4031 152 8e-33 seq4161 150 3e-32 seq3992 114 2e-21 seq4257 86.0 1e-12 seq4015 86.0 1e-12 seq3985 84.2 3e-12 >seq3905 Length=3016556 Score = 197 bits (218), Expect = 2e-46 Identities = 177/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||| ||||| ||||| || || ||||||| ||||| Sbjct 2381272 TCTTCGCGATAACATCCAGGGAATCACAAAGCCCGCTATTCGCCGCTTGGCTCGCCGTGG 2381213 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| ||||||| || ||||||| |||| ||| | ||| ||||| | || Sbjct 2381212 TGGTGTAAAGCGTATCTCTGGCCTGATCTATGAGGAGACTCGCGGTGTCCTGAAGGTGTT 2381153 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||| | |||||| | ||||||||| |||||||| | ||||| || Sbjct 2381152 CCTGGAGAACGTTATTCGTGATGCCGTTACCTATACCGAACACGCTAAGAGGAAGACGGT 2381093 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| |||||||| |||| |||||| |||| ||||| || || Sbjct 2381092 CACCGCCATGGATGTCGTTTATGCACTGAAGCGTCAGGGTCG 2381051 Score = 194 bits (214), Expect = 3e-45 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||| ||||| ||||| || || ||||||| ||||| Sbjct 2375326 TCTTCGCGATAACATCCAGGGAATCACAAAGCCCGCTATTCGCCGCTTGGCTCGCCGTGG 2375267 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| ||||||| || |||| || |||| ||| | ||| ||||| | || Sbjct 2375266 TGGTGTAAAGCGTATCTCTGGCCTGATCTACGAGGAGACTCGCGGTGTCCTGAAGGTGTT 2375207 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||| | |||||| | ||||||||| |||||||| | ||||| || Sbjct 2375206 CCTGGAGAACGTTATTCGTGATGCCGTTACCTATACCGAACACGCTAAGAGGAAGACGGT 2375147 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| |||||||| |||| |||||| |||| ||||| || || Sbjct 2375146 CACCGCCATGGATGTCGTTTATGCACTGAAGCGTCAGGGTCG 2375105 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||| | | |||||| || ||||||||||| || || ||||| ||||| Sbjct 2368642 GCTAAGCGCCATAGGAAGGTTCTTCGTGACAACATCCAAGGTATTACGAAGCCTGCTATT 2368583 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| ||||| || || |||||| | ||||| | |||| || |||| Sbjct 2368582 CGCCGCTTGGCTCGCCGTGGGGGTGTAAAGCGTATTTCTGGCCTCATCTACGAGGAGACG 2368523 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| |||||| | |||||| | ||||||||| Sbjct 2368522 CGCGGTGTCCTGAAGGTGTTCCTGGAGAACGTTATTCGTGATGCCGTTACCTATACCGAA 2368463 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||| |||||| |||||||| |||| |||||| |||| ||||| || Sbjct 2368462 CACGCTAAGAGGAAGACGGTCACCGCCATGGATGTCGTTTATGCACTGAAGCGTCAGGGT 2368403 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 2368402 CGCACTCTGTACGGCTTTGG 2368383 >seq3946 Length=923005 Score = 176 bits (194), Expect = 7e-40 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||| | | |||||| ||||||||||| ||||| || ||||| ||||| Sbjct 22617 GCTAAGCGCCATAGGAAGGTTCTTCGTGATAACATCCAGGGAATTACGAAGCCTGCTATT 22676 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || |||||| ||||||| || ||||||| |||| | Sbjct 22677 CGTCGCTTGGCTCGTCGTGGGGGTGTGAAGCGTATCTCTGGTCTGATCTATGAGGAGACT 22736 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || | | | ||| || | ||||||| | ||| ||||| Sbjct 22737 CGAGGCGTCCTGAAGGTGTTTTTAGAAAACGTCATTCGTGATGCTGTTACCTACACCGAA 22796 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| | |||||| | |||||||| |||| ||||| || Sbjct 22797 CACGCTAAGAGGAAGACTGTCACCGCTATGGATGTTGTCTATGCTCTGAAGCGTCAGGGT 22856 Query 16673 CG 16674 || Sbjct 22857 CG 22858 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| | | |||||| ||||||||||| |||||||| || || ||||| Sbjct 27087 CGCTAAGCGTCACAGGAAGGTTCTTCGTGATAACATCCAGGGAATCACAAAACCCGCTAT 27028 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||| |||||||| || |||||| | || || || |||| || |||| Sbjct 27027 TCGCCGCTTGGCTCGCCGTGGTGGTGTAAAGCGTATTTCCGGCCTGATCTACGAGGAGAC 26968 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| |||||| | ||||||| | || ||||| Sbjct 26967 TCGCGGTGTCCTGAAGGTGTTCCTGGAGAACGTTATTCGTGATGCTGTTACTTACACCGA 26908 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | |||||| | || ||||| |||| ||||| || Sbjct 26907 ACATGCCAAGAGGAAGACCGTTACTGCTATGGATGTTGTTTATGCGCTGAAGCGTCAGGG 26848 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 26847 TCGCACTCTGTACGGCTTCGGAGGTTAA 26820 >seq4031 Length=4291168 Score = 152 bits (168), Expect = 8e-33 Identities = 183/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || || || || || ||||||||||| ||||||||||| ||||| Sbjct 3588711 CGTGACAACATCCAGGGTATTACAAAACCCGCTATCCGTCGCCTGGCTCGTCGCGGTGGT 3588652 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||||| ||| |||| ||||| | |||| || ||||| | || || Sbjct 3588651 GTCAAGCGTATTTCTGGGTTGATCTACGAAGAAACCCGTGGCGTGTTGAAAGTGTTTCTA 3588592 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||| | ||||||| || || || || || || || | ||||| |||||| Sbjct 3588591 GAAAACGTTATTCGTGATGCTGTCACATACACGGAACATGCGAAGAGAAAGACGGTCACC 3588532 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || || || |||| || ||||| || | | | || || ||||| | Sbjct 3588531 GCAATGGATGTTGTTTACGCTCTGAAGCGCCAAGGTCGCACGCTGTACGGCTTTGGCGGC 3588472 Query 16697 TAATCTTCT 16705 ||| ||||| Sbjct 3588471 TAAACTTCT 3588463 >seq4161 Length=20691 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | ||| || ||||| || || || || || ||||| ||||| Sbjct 7537 CGCTAAGCGTCATAGGAAGGTTCTCCGTGATAATATTCAGGGTATTACGAAGCCCGCTAT 7478 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||| |||||||| || |||||| |||| || || | || ||||||| Sbjct 7477 TCGCCGCTTGGCTCGCCGTGGTGGTGTGAAGCGTATCTCCGGTCTGATTTACGAAGAGAC 7418 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| |||| | ||||| ||| || || | ||| || | ||| ||||| Sbjct 7417 CCGTGGTGTTCTGAAAGTGTTCCTGGAGAATGTCATTCGTGACGCCGTTACCTACACCGA 7358 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| ||||||| || |||| || || || Sbjct 7357 ACACGCCAAGAGAAAGACTGTGACTGCTATGGATGTCGTCTACGCGCTGAAGCGACAGGG 7298 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| |||||| ||||| Sbjct 7297 TCGCACTCTGTATGGCTTTGGAGGTTAA 7270 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||| ||||| || || || || ||||||| |||||| Sbjct 4114 CTTCGTGATAACATCCAGGGTATCACGAAGCCCGCAATTCGCCGCTTGGCTCGCCGTGGT 4173 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || || |||| || |||| ||||| ||| |||| | || Sbjct 4174 GGCGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGACTCGTGGTGTCCTGAAAGTGTTT 4233 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || | || ||||| || || || | ||||| ||| Sbjct 4234 CTGGAGAACGTGATCCGTGACGCCGTTACTTACACCGAACATGCCAAGAGGAAGACCGTC 4293 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | ||||| || |||| ||||| || |||| | || ||||| ||| Sbjct 4294 ACCGCTATGGATGTTGTCTACGCGCTGAAGCGTCAGGGTCGTACTCTGTACGGTTTCGGA 4353 Query 16694 AGTTAA 16699 | ||| Sbjct 4354 GGCTAA 4359 >seq3992 Length=3144111 Score = 114 bits (126), Expect = 2e-21 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | ||||| || || ||||| || || || ||||| || || Sbjct 3126520 CGCGAAACGTCATCGTAAAGTACTTCGCGACAATATCCAGGGTATTACAAAGCCCGCCAT 3126461 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||| |||||||| || || ||||| ||||||| | ||||||| |||| Sbjct 3126460 TCGTCGCTTGGCGCGTCGTGGGGGTGTGAAGCGGATCTCTGGCCTTATCTATGAGGAGAC 3126401 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||| |||| | | | || || | || || || || ||||| Sbjct 3126400 AAGAGGAGTGCTAAAGGTCTTTTTAGAAAATGTCATTCGCGACGCAGTCACGTACACCGA 3126341 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||||| | |||||| | || || || || ||||| || || Sbjct 3126340 GCACGCAAAGCGTAAAACTGTCACTGCTATGGATGTTGTGTACGCCTTAAAACGGCAGGG 3126281 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 3126280 ACGCACACTGTACGGCTTCGGAGGTTAA 3126253 >seq4257 Length=10342467 Score = 86.0 bits (94), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | || ||||| || || || || || || ||||||| ||||||||||||||| | Sbjct 4473143 TCTTTGCGACAACATTCAGGGTATTACAAAACCCGCTATCCTTCGTCTGGCTCGTCGCAG 4473084 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 ||| ||||||||| | ||||| || |||| ||||||| ||| Sbjct 4473083 TGGCGTCAAGCGTAT-TCTGGGCTGATCTACGAAGAGACTCG 4473043 >seq4015 Length=1437299 Score = 86.0 bits (94), Expect = 1e-12 Identities = 139/202 (69%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 16461 ATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCA 16520 |||||||| | || ||||| ||||| ||||| |||| ||||||| ||||||||||| | Sbjct 328775 ATAACATCTAGGGTATCACGAAGCCTGCTATTTGTCGCTTGGCTCGCCGTGGTGGAGTGA 328716 Query 16521 AGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| |||| || || ||| || |||| | ||| || |||| || Sbjct 328715 AGCGTATCTCCGGCCTGATCTCCGAGGAGACTAGTGGTG-----------CTCCTGGAGG 328667 Query 16581 CCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCA 16640 | |||| | ||| | | |||| |||| || || || | ||||| ||||| ||| Sbjct 328666 ACATTATTCGTGACACGGTTACCTATGCCGAACATGCCAAGAGGAAGACCGTCACTGCCA 328607 Query 16641 TGGATATCGTCTATGCATTGAA 16662 ||||| | | |||||| |||| Sbjct 328606 TGGATGTTGCCTATGCGCTGAA 328585 >seq3985 Length=4226860 Score = 84.2 bits (92), Expect = 3e-12 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||||| ||||||||||| || ||| ||||| |||| || | ||||||| |||| Sbjct 4013598 TCTTCTTGATAACATCCAGGGTATCGTAAAGCCCTCTATTCGCTGCTTGGCTCGCTGTGG 4013657 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 | | || ||| |||| || ||| | | || |||| || || ||| ||||| | || Sbjct 4013658 CGCTGCGAAACGTATCTCCGGCTTGATTTCCGAGGAGACTCTTGGTGTCCTGAAGGTGTT 4013717 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| | | || | ||| | | ||| | | | || || || | ||||| || Sbjct 4013718 CTTGGAGAACATCATTCGTGACACCGTTACCTACAACAAACATGCCAAGAGGAAGACCGT 4013777 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||| |||||||| || ||||||| |||| ||||| || Sbjct 4013778 CACCGCCATGGATGTCATCTATGCGCTGAAGCGTCAGGG 4013816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070793954567